Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme55773g00001 ATGGGGGGCAACATGGGCCTCTGGGACAAAGATTGTGTTAATGGAGATGTTGGAACTTCAAGAGAAGTGGATAATAGACAGAGGAATATGCCTCTTCCAGATGACAGAATACCTCCAAGAGGCCAAGCACTTGCTTATCCTGAAGCAGTTCTACTTGTCAATCCTATAGAACCAGAACTTAAAAGGAGAG 190 0.4421 MGGNMGLWDKDCVNGDVGTSREVDNRQRNMPLPDDRIPPRGQALAYPEAVLLVNPIEPELKRR 63
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme55773g00001 63 MobiDBLite consensus disorder prediction 1 41 - -
Trme55773g00001 63 MobiDBLite consensus disorder prediction 15 33 - -
Trme55773g00001 63 Pfam Rhamnogalacturonate lyase family 24 61 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme55773g00001 Trme-Chr55773 59 857 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme55773g00001 24 61 Polysaccharide Lyase AT1G09880 76.316 9.24e-17 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme55773g00001 K18195 - mnt:21408253 80.8777