Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme55720g00001 ATGGAGGCTTTGAAAGTTTTGATTGATGTGAGAAATCACCCTATTTTGATTCATTGCAAACGAGGAAAGCATAGAACAGGTTCCCTTGTTGGATGCTTCAGAAAGTTGCAGAATTGGTGTTTGTCTTCCGTGTTTGAGGAGTATCAGCGATTTGCCGGTGTTAAATCCAGGACAGCGGATTTAACATTTATAGAGATGTTTGACGTCTTAAGTCTTAGGCAGTGCCTCTACAGCATCATCTACCAGTACCAAGGTGCTTCAAAGAAGCGCAGATTGATGTACCAACATGAGAATTTACAGAAACCTCGACTGACATCATTTTAA 324 0.4074 MEALKVLIDVRNHPILIHCKRGKHRTGSLVGCFRKLQNWCLSSVFEEYQRFAGVKSRTADLTFIEMFDVLSLRQCLYSIIYQYQGASKKRRLMYQHENLQKPRLTSF 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme55720g00001 107 ProSitePatterns Tyrosine specific protein phosphatases active site. 17 27 IPR016130 GO:0016311|GO:0016791
Trme55720g00001 107 Gene3D Protein tyrosine phosphatase superfamily 1 71 IPR029021 -
Trme55720g00001 107 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 2 69 IPR029021 -
Trme55720g00001 107 Pfam Tyrosine phosphatase family 2 69 IPR004861 -
Trme55720g00001 107 PANTHER TYROSINE-PROTEIN PHOSPHATASE 2 81 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme55720g00001 1 103 Protein tyrosine phosphatase (PTP) family AT3G02800 69.231 1.22e-50 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme55720g00001 K18045 - psat:127093186 196.438