Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme55709g00001 ATGCCAGATTGCATATTTGCTCCATATTTTCCACCAGAAGAACCACAAAAATTTGCAAATGTTCACAAAATATTTGGTGCAAGCAATGTGAGTAAACTTTTGAATGAAGTTCAAGCACATCAAAGAGAAGATGCAGTGAATTCTCTTGCTTATGAAGCTGAAGCAAGGATTAAAGATCCTGTTTATGGTTGTGTTGGTGCCATTTCAGTTCTTCAAAGACAAGTTATTAGACTCCAAAAGGAACTTGATGCTACAAATGCTGATTTGATTCGATATAGTACTTGCACCGATCATATACTGCCGAATAATCAACATCAAGATCACCAAGCTACAAGGATTCATGAAGATGGAGGAGGTTCTTCTCTTGTTCATCAATCTCCTCCTGCAAATTTTTACTATCCTTCTCCTTGGAACAATGATCCACTTGGAGATGGTAATTTTCATACAGGAGGAGGTGATAATATATAA 468 0.3675 MPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQAHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYSTCTDHILPNNQHQDHQATRIHEDGGGSSLVHQSPPANFYYPSPWNNDPLGDGNFHTGGGDNI 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme55709g00001 155 Coils Coil 68 88 - -
Trme55709g00001 155 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 109 - -
Trme55709g00001 155 ProSiteProfiles LOB domain profile. 1 89 IPR004883 -
Trme55709g00001 155 Pfam Lateral organ boundaries (LOB) domain 2 85 IPR004883 -
Trme55709g00001 155 MobiDBLite consensus disorder prediction 102 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme55709g00001 Trme-Chr55709 412 879 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme55709g00001 3 95 AS2 family AT3G27650 83.871 4.35e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme55709g00001 LOB 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme55709g00001 - - gmx:100306630 225.713