Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme556g00002 ATGAGGGAAATCAAAGTGCAAAAGCTTGTGCTCAACATCTCTGTCGGTGAAAGTGGAGATCGTCTCACCAGGGCTGCCAAGGTTCTTGAACAGCTTAGTGGCCAAACCCCTGTTTTCTCTAAAGCTAGGTACACCGTCCGTTCCTTTGGTATTAGAAGGAATGAAAAAATTGCTTGCTACGTCACTGTTAGAGGCGACAAGGCAATGCAGCTTTTGGAGAGCGGTTTGAAGGTCAAGGAATATGAGCTGTTGAGGAGAAACTTCAGTGATACTGGTTGTTTTGGCTTCGGTATTCAGGAACATATCGATTTGGGAATCAAGTATGATCCTTCTACTGGTATTTATGGAATGGATTTCTTTGTTGTCTTGGAGCGCCCTGGTTATCGTGTTGGACGTCGTCGCCGTTGCAAGGCACGTGTTGGAATCCAGCACCGTGTCACAAAGGAC 447 0.4631 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKD 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme556g00002 149 Pfam Ribosomal protein L5 1 52 IPR031310 -
Trme556g00002 149 SUPERFAMILY RL5-like 1 148 IPR022803 -
Trme556g00002 149 Gene3D - 1 149 IPR022803 -
Trme556g00002 149 ProSitePatterns Ribosomal protein L5 signature. 29 45 IPR020929 GO:0003735|GO:0005840|GO:0006412
Trme556g00002 149 Pfam ribosomal L5P family C-terminus 56 133 IPR031309 -
Trme556g00002 149 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 149 IPR002132 GO:0003735|GO:0005840|GO:0006412
Trme556g00002 149 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 1 149 IPR002132 GO:0003735|GO:0005840|GO:0006412
Trme556g00002 149 FunFam 60S ribosomal protein L11 1 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme556g00002 Trme-Chr556 2564 4053 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme556g00002 1 149 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 96.644 6.08e-106 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme556g00002 K02868 - mus:103987828 280.411