Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme55686g00001 ATCATGGTTGGTCTTCCGTCTGCTGAAAATAGGGAAACAATCTTGAAAACTCTTCTAGCTAACGAGAAACATGACGATATAGACTTCAAAGAGCTTTCAACTATGACAGAAGGATATAGTGGAAGTGATCTTAAGAACTTGTGCATGACTGCAGCATATCGCCCCCTTAAGGAGCTAATACAACAGGAGAAGGAAAAAGAAAAGGTAATTCCTTAA 216 0.3889 IMVGLPSAENRETILKTLLANEKHDDIDFKELSTMTEGYSGSDLKNLCMTAAYRPLKELIQQEKEKEKVIP 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme55686g00001 71 Gene3D - 6 71 - -
Trme55686g00001 71 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 62 IPR027417 -
Trme55686g00001 71 Pfam AAA+ lid domain 26 63 IPR041569 -
Trme55686g00001 71 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme55686g00001 Trme-Chr55686 467 767 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme55686g00001 1 64 Calmodulin-binding Proteins AT3G56690 38.462 1.66e-07 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme55686g00001 - - tpra:123903814 113.235