Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme55651g00001 ATAGCAGTGGACATTACATTCAAAAACACAGCTGGTCCTGAAAAACATCAAGCAGTAGCAGTAAGAAACAACGCCGATCTCTCAACATTCTACCGATGCAGCTTCGAAGGATATCAAGACACACTTTATGTTCACTCATTAAGACAATTCTACAGAGATTGCAAAATCTATGGCACAGTCGACTTCATTTTCGGCAACGCAGCTGTAGTTTTCCAGAATTGCAACATCTATGCTAGAAAACCAATGCAAAATCAGAAAAATGCTGTCACAGCACAAGGTAGAACTGATCCAAATCAAAACACTGGAATTTCAATCCAAAACTGTACTATTGATGCTGCACCTGATTTAGCTAATGACTTGAATTCGACATCGAGTTACTTAGGTAGACCATGGAAGATTTATTCAAGAACTGTTTATATGCAATCATATATTGGTAATTTTGTTGATCCTTCTGGTTGGTTAGAGTGGAATGGAACACTTGGATTAGATACTATTTTTTATGGTGAGTTTGATAACTATGGACCTGGTTCTATAACTGATAATAGGGTTCAATGGCCTGGTTATTTTCTTTTGAATGATACTCAAGCTTGGAATTTCACTGTTCTTAACTTTACTTTGGGAAATACTTGGCTTCCTGATACAGATATACCTTACACTGAAGGGTTACTAAAGTAA 675 0.3674 IAVDITFKNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRDCKIYGTVDFIFGNAAVVFQNCNIYARKPMQNQKNAVTAQGRTDPNQNTGISIQNCTIDAAPDLANDLNSTSSYLGRPWKIYSRTVYMQSYIGNFVDPSGWLEWNGTLGLDTIFYGEFDNYGPGSITDNRVQWPGYFLLNDTQAWNFTVLNFTLGNTWLPDTDIPYTEGLLK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme55651g00001 224 FunFam Pectinesterase 4 1 222 - -
Trme55651g00001 224 Pfam Pectinesterase 1 207 IPR000070 GO:0030599|GO:0042545
Trme55651g00001 224 Gene3D - 1 224 IPR012334 -
Trme55651g00001 224 ProSitePatterns Pectinesterase signature 2. 56 65 IPR033131 -
Trme55651g00001 224 PANTHER PECTINESTERASE 1 214 - -
Trme55651g00001 224 SUPERFAMILY Pectin lyase-like 2 221 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme55651g00001 Trme-Chr55651 2 676 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme55651g00001 1 223 Carbohydrate Esterase AT3G10720 75.336 1.22e-126 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme55651g00001 K01051 - gmx:100816503 428.328