Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme55650g00001 GGAAAATATGAAAACACAGTTAAAGAATGCACCAAAGCATTAGAATTGAATCCCATGTATGTCAAAGCTTTGGTAAGAAGAGGAGAGGCCAATGAAAAGCTTGAGCATTTTGAAGAAGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTGGGAAAACCATCCGCCGGCTAGAGCCCCTTGCTGCAGTAAAACGGGAAAAGATGAAGGAAGAAATGATTG 241 0.3983 GKYENTVKECTKALELNPMYVKALVRRGEANEKLEHFEEAIADMKKILEIDPSNDQAGKTIRRLEPLAAVKREKMKEEMI 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme55650g00001 80 SUPERFAMILY TPR-like 1 58 IPR011990 GO:0005515
Trme55650g00001 80 Gene3D Tetratricopeptide repeat domain 1 79 IPR011990 GO:0005515
Trme55650g00001 80 ProSiteProfiles TPR repeat profile. 21 54 IPR019734 GO:0005515
Trme55650g00001 80 Coils Coil 27 47 - -
Trme55650g00001 80 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 1 80 - -
Trme55650g00001 80 SMART tpr_5 21 54 IPR019734 GO:0005515
Trme55650g00001 80 Pfam Tetratricopeptide repeat 22 54 IPR013105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme55650g00001 Trme-Chr55650 167 845 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme55650g00001 3 77 Calmodulin-binding Proteins AT3G25230 44.000 8.38e-09 48.5