Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme55632g00001 CATTGCAACTCAGATTCCCAAAATTCTGTTCTGTTTGGGGTCAATATCGATTCGTCTGGCCTTCTGCTCCCTACCACTGTCCCTCGTTATACTACTGCATCAGCTGATGCCGATGCATCGACAATGCCATTAGGGGAGTCTGGTTTCCAGGGTTCTCCATATCCTTGCATGCAGGATTCATCGGAGTTGTTGCAAAGTGCGGGGCAGATTGATGCTCAAAACCAGATGCCGACATTTGTGAAGGTATACAAATCAGGTTCGGTAGGGCGCTCACTTGACATCTCGCGGTTCAGCAGCTATCACGAGCTGCGGGAGGAGTTAGCTCATATGTATGGAATTGAGGGGAAATTTGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAGTAA 438 0.4886 HCNSDSQNSVLFGVNIDSSGLLLPTTVPRYTTASADADASTMPLGESGFQGSPYPCMQDSSELLQSAGQIDAQNQMPTFVKVYKSGSVGRSLDISRFSSYHELREELAHMYGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme55632g00001 145 Gene3D - 72 145 - -
Trme55632g00001 145 SUPERFAMILY CAD & PB1 domains 76 145 - -
Trme55632g00001 145 ProSiteProfiles PB1 domain profile. 77 145 IPR000270 GO:0005515
Trme55632g00001 145 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 41 145 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme55632g00001 Trme-Chr55632 3 544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme55632g00001 5 145 B3 DNA Binding Superfamily AT5G37020 71.127 3.76e-63 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme55632g00001 - - gmx:100780393 259.996