Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme55572g00001 ATGTTTGGCTGCAGGTATTTGGCTCCAGAGTACTTTATGCACGGTATTGTGGATGAAAAGACTGACATATTCGCGTTCGGCGTTTTGCTACTTGAACTCATAACCGGTCGCCGTGCAGTTGATTCAGATAGTAGACAAAGCATTGTCATTTGGGCCAAGCCACTTCTTGACTCAAACAATGTCAAAGAGCTAGTAGATCCAAGATTACAAGGGAAATATGATCCTATTGAAATGAAACGTGCCATGGAAATAGCTTCCTTGTGCGTCCACCATTCATCTTCCAAGAGGCCATTCATGAAACAA 303 0.429 MFGCRYLAPEYFMHGIVDEKTDIFAFGVLLLELITGRRAVDSDSRQSIVIWAKPLLDSNNVKELVDPRLQGKYDPIEMKRAMEIASLCVHHSSSKRPFMKQ 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme55572g00001 101 Gene3D Transferase(Phosphotransferase) domain 1 2 101 - -
Trme55572g00001 101 ProSiteProfiles Protein kinase domain profile. 1 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme55572g00001 101 PANTHER OS08G0249100 PROTEIN 3 101 IPR046958 -
Trme55572g00001 101 SUPERFAMILY Protein kinase-like (PK-like) 5 101 IPR011009 -
Trme55572g00001 101 Pfam Protein tyrosine and serine/threonine kinase 4 101 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme55572g00001 Trme-Chr55572 12 578 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme55572g00001 6 101 Trihelix Transcription Factor Family AT5G38560 48.544 2.44e-26 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trme55572g00001 PK_Tyr_Ser-Thr 3.8e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme55572g00001 - - gmx:100775930 168.703