Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme55552g00001 ATGATTCTTATTACATTCACAAATGAAGGTCCAGAGGAACACCAAATAAAATTAGATTGGTCTACAAGGCAGAAGATTTGTGTTGGCATTGCTAAAGGTTTGGCATACCTCCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCCACTAATGTATTGCTTGATACGGATCTCAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGATAATACTCACATTAGTACTAGAATTGCTGGGACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAGATYGTTAGTGGAAGGAGCAACACCATGCATCGGGCAAAGGAGGAAGCATTCTATATTCTTGATTGG 417 0.4005 MILITFTNEGPEEHQIKLDWSTRQKICVGIAKGLAYLHEESRLKVVHRDIKATNVLLDTDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGRSNTMHRAKEEAFYILDW 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme55552g00001 139 Pfam Protein kinase domain 17 131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme55552g00001 139 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672|GO:0006468
Trme55552g00001 139 SMART serkin_6 2 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme55552g00001 139 FunFam Lectin-domain containing receptor kinase A4.3 10 139 - -
Trme55552g00001 139 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 139 - -
Trme55552g00001 139 ProSiteProfiles Protein kinase domain profile. 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme55552g00001 139 Gene3D Transferase(Phosphotransferase) domain 1 7 139 - -
Trme55552g00001 139 SUPERFAMILY Protein kinase-like (PK-like) 15 129 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme55552g00001 Trme-Chr55552 169 743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme55552g00001 10 139 Receptor kinase-like Gene Family AT1G53420 80.000 3.89e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme55552g00001 Pkinase 4.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme55552g00001 - - qsa:O6P43_001072 250.366