Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme555527g00001 ATGGATGCAACGATAATCACAGGCAGCTTAAATGCAGTCGATGGAACAGGCACCTTCCAAAGTGCAACTGTTGCTGCTGTTGGAGATGGGTTTATAGCCCAGGACATTGGGTTCCAAAACACTGCAGGCCCACAGAAGCATCAGGCAGTTGCTCTCCG 158 0.5063 MDATIITGSLNAVDGTGTFQSATVAAVGDGFIAQDIGFQNTAGPQKHQAVALR 53
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme555527g00001 53 Pfam Pectinesterase 2 53 IPR000070 GO:0030599|GO:0042545
Trme555527g00001 53 SUPERFAMILY Pectin lyase-like 2 53 IPR011050 -
Trme555527g00001 53 PANTHER PECTINESTERASE 1 53 - -
Trme555527g00001 53 Gene3D - 1 53 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme555527g00001 Trme-Chr555527 1 243 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme555527g00001 2 53 Carbohydrate Esterase AT1G11580 82.692 2.19e-23 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme555527g00001 K01051 - aew:130795016 94.7449