Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme55549g00001 GTGGATGCTATGACAACAACAGAACATGGAAATGAAGGTGGACGGGTTATTGAYGGAATACGGAAACAGTTGCAGATTGAATTAGATGGCGCAGAGCAACGCAAAGGTGTTTTCGTGATTGGTGCAACAAATAGGCCTGAGGTGATCGACAGTGCTCTCCTACGTCCGGGTAGATTTGGCAATCATAT 188 0.4574 VDAMTTTEHGNEGGRVIDGIRKQLQIELDGAEQRKGVFVIGATNRPEVIDSALLRPGRFGNH 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme55549g00001 62 ProSitePatterns AAA-protein family signature. 37 55 IPR003960 GO:0005524|GO:0016887
Trme55549g00001 62 Gene3D - 1 60 IPR027417 -
Trme55549g00001 62 PANTHER AAA-FAMILY ATPASE 2 61 - -
Trme55549g00001 62 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 59 IPR027417 -
Trme55549g00001 62 Pfam ATPase family associated with various cellular activities (AAA) 1 61 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme55549g00001 Trme-Chr55549 1 361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme55549g00001 11 59 Calmodulin-binding Proteins AT3G56690 65.306 3.97e-15 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme55549g00001 K14571 - ming:122057198 91.2781