Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme55506g00001 ATGGAAAGCAGGGATTTCGTGGCGGCTCGAAAGTTTGCTCTTAAGGCTCAGAAGTTGTATCCTGTTTTGGAAAACATAGCTCAAATGCTTGTTGTTTGTGATGTGCACTGCTCTGCTGAGCAGAAAGCGATTGATGATGAGATTGATTGGTATGGAATTCTTCAGCTAGAACACACAGCTGGTGATACAATGATTAAGAAGCAGTACCGAAAGTTTGCTCTTCAACTTCATCCCGATAAAAACAAGTTTGCTGGTGCAGAAGCTGCATTTAAGCTGATTGGAGAAGCTCAAAGAGTGCTTTTAGACAGAGAAAAGCGAACTAGATATGACATGAAGCTTAAGGTGAAAAAAACTGCTATGCCACATCATAATCCACAGAAGGTTCCTACGAATTTCAATTCTGCAATGAAAAACAATGCCAGGCCCAATTTTACAAACTCGAACACCCAGCAGCAGCAGCAAAATAAGCAGCCCGCGCAGCAGCAAAATGGTGAGCGCCGTACTTTTTGGACTGCTTGTCCGTTTTGTTCTGTGAAGTATCAGTACTACAGAGAAGTTTTAAATAAACCTCTTCGCTGTCAACACTGCCATAGGCCATTCGTTGCACATATTGTGGATATACAAGGTACATCACGGACAACTAACTCAAGTCAACAAGCTTCCAAGGAGAATGTTGGATCTCAAGGCAACTCGCATGCTGAGAANTCCAATACAAACTCTTTCAAGAATAAAGTCCCGGTTGGTGTCTCTAGAAAGTCAAATGTGAAGAGAAACTGGAATCAAGTGAATGAATCCAGTCAAAGCTCTGATTCTACAAGCAGCAGTGATTCTAGTGATTCTGAAGTTGAAAGA 852 0.4178 MESRDFVAARKFALKAQKLYPVLENIAQMLVVCDVHCSAEQKAIDDEIDWYGILQLEHTAGDTMIKKQYRKFALQLHPDKNKFAGAEAAFKLIGEAQRVLLDREKRTRYDMKLKVKKTAMPHHNPQKVPTNFNSAMKNNARPNFTNSNTQQQQQNKQPAQQQNGERRTFWTACPFCSVKYQYYREVLNKPLRCQHCHRPFVAHIVDIQGTSRTTNSSQQASKENVGSQGNSHAEXSNTNSFKNKVPVGVSRKSNVKRNWNQVNESSQSSDSTSSSDSSDSEVER 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme55506g00001 284 ProSiteProfiles dnaJ domain profile. 49 113 IPR001623 -
Trme55506g00001 284 SMART dnaj_3 48 105 IPR001623 -
Trme55506g00001 284 CDD DnaJ 49 102 IPR001623 -
Trme55506g00001 284 PRINTS DnaJ domain signature 51 69 IPR001623 -
Trme55506g00001 284 PRINTS DnaJ domain signature 69 84 IPR001623 -
Trme55506g00001 284 PRINTS DnaJ domain signature 85 105 IPR001623 -
Trme55506g00001 284 MobiDBLite consensus disorder prediction 119 163 - -
Trme55506g00001 284 PANTHER BNAC03G44070D PROTEIN 1 258 - -
Trme55506g00001 284 SUPERFAMILY Chaperone J-domain 46 113 IPR036869 -
Trme55506g00001 284 MobiDBLite consensus disorder prediction 211 276 - -
Trme55506g00001 284 Pfam DnaJ domain 49 110 IPR001623 -
Trme55506g00001 284 MobiDBLite consensus disorder prediction 124 163 - -
Trme55506g00001 284 Gene3D DnaJ domain 46 169 IPR036869 -
Trme55506g00001 284 MobiDBLite consensus disorder prediction 211 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme55506g00001 Trme-Chr55506 1 852 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme55506g00001 1 202 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.783 7.81e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme55506g00001 - - psat:127073362 403.675