Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme55502g00001 GCAGTAGACTTTGATCCAAATTCTTTGCGAAGTGCGCTACCTAAAGCAGTTTCGTCTTTGGAATGGGCAATTTCTGAGGGAAAAGGAAGAGTTTATGTGCATTGTACTGCAGGACTTGGAAGAGCTCCAGCAGTTGCAATTGCTTATTTGTTCTGGTTTTCTGACATGAATCTAAATGCAGCCTATGATCTGCTAACTTCAAAGAGACCTTGTGGACCGAATAAAACAGCGATACGTGGAGCTACTTATGATTTGGCTAAGAATGATCCATGGAAGGAGCCATTTGAGAGTCT 293 0.4232 AVDFDPNSLRSALPKAVSSLEWAISEGKGRVYVHCTAGLGRAPAVAIAYLFWFSDMNLNAAYDLLTSKRPCGPNKTAIRGATYDLAKNDPWKEPFESL 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme55502g00001 98 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 2 76 IPR029021 -
Trme55502g00001 98 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 11 70 IPR000387 GO:0016311|GO:0016791
Trme55502g00001 98 Pfam Dual specificity phosphatase, catalytic domain 8 74 IPR000340 GO:0008138|GO:0016311
Trme55502g00001 98 Gene3D Protein tyrosine phosphatase superfamily 1 98 IPR029021 -
Trme55502g00001 98 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 2 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme55502g00001 Trme-Chr55502 357 914 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme55502g00001 1 98 Protein tyrosine phosphatase (PTP) family AT3G10940 85.714 5.50e-60 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme55502g00001 - - gmx:100805592 188.734