Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme55493g00001 ATGAATTATGCAGAAGGGTCCTTGCCACTTCCTTGGTCTATTAGAATGAAAATTGCGCTTGGTGCAGCAAAAGGTCTTAATTTTCTCCACGAAGAAGCTCAAAGGCCAATAATCTATCGTGATTTCAAGACATCTAATATTCTACTAGACGCGGAATACAATGCAAAACTCTCCGATTTTGGACTTGCCAAAGATGGTCCTCAAGGAGAAAATACACACATATCAACAAGAGTTATGGGAACATATGGTTATGCAGCTCC 260 0.4 MNYAEGSLPLPWSIRMKIALGAAKGLNFLHEEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPQGENTHISTRVMGTYGYAAP 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme55493g00001 87 ProSitePatterns Serine/Threonine protein kinases active-site signature. 37 49 IPR008271 GO:0004672|GO:0006468
Trme55493g00001 87 ProSiteProfiles Protein kinase domain profile. 1 87 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme55493g00001 87 Gene3D Transferase(Phosphotransferase) domain 1 2 87 - -
Trme55493g00001 87 FunFam Os07g0541700 protein 3 81 - -
Trme55493g00001 87 SUPERFAMILY Protein kinase-like (PK-like) 7 87 IPR011009 -
Trme55493g00001 87 Pfam Protein kinase domain 17 87 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme55493g00001 87 PANTHER OS01G0588500 PROTEIN-RELATED 10 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme55493g00001 Trme-Chr55493 1 346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme55493g00001 8 87 Glycoside Hydrolase AT3G07070 66.250 6.49e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme55493g00001 Pkinase 2.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme55493g00001 - - vum:124829441 165.236