Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5548g00001 GGTTATGTAACACAAGATGATGCTATGCCGTCAACTTTAACAGCTGGTGAAACTTTATACTACTCAGCTCAACTTCAATTTCCAAACTCAATGTCCATAGCAGAGAAGAAGAAACAAGCAGATATCACACTCAGAGAAATGGGCCTGCAAGATGCTATTAACACAAGGGTTGGAGGGTATGGTTCTAAGGGCCTAAGTGGGGGGCAAAAGAGAAGACTTAGCATTTGCATTGAGATCCTAACACACCCCAGACTCCTTTTCCTTGACGAACCAACCAGTGGACTTGATAGTGCAGCTTCCTACTATGTTATGAGTAGAATTGCAAGTTTGAGCCTAAGGGATGGTATTCAAAGGACAATAGTTGCATCCATTCATCAGCCTAGTAGTGAAGTTTTTGAGCTTTTCCATGACCTCTGTCTTCTTTCGTCTGGGGAGACAGTATATTTTGGTCCAGCATCTGAAGCAAATCAGTTTTATGCTTCAAATGGTTTCCCTTGCCCAACTCTCTATAATCCTTCTGATCACTACTTAAGGATCATAAACAAAGATTTTGAACAGGACACTGAAGAAGGATTTGGTAAAGGAGTAATTACTGAAGAAGCAATTGGTATCCTTGTAAATTCTTATAAGGCGTCTGAAATTAAAAGCCAAGTTCAGATCGAAGTGACAAAAATAAGTGAAAGTAACGGGCGCATATTAGGTTATATCTTAGTAGTAAGAATGTGGAAGACCATGAATTTCTACTTCCAAGGGTTGTCGCTAGAGTTTAGAGTGAATTTTAAGTATTAA 789 0.3942 GYVTQDDAMPSTLTAGETLYYSAQLQFPNSMSIAEKKKQADITLREMGLQDAINTRVGGYGSKGLSGGQKRRLSICIEILTHPRLLFLDEPTSGLDSAASYYVMSRIASLSLRDGIQRTIVASIHQPSSEVFELFHDLCLLSSGETVYFGPASEANQFYASNGFPCPTLYNPSDHYLRIINKDFEQDTEEGFGKGVITEEAIGILVNSYKASEIKSQVQIEVTKISESNGRILGYILVVRMWKTMNFYFQGLSLEFRVNFKY 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5548g00001 262 Pfam ABC transporter 1 93 IPR003439 GO:0005524
Trme5548g00001 262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 159 IPR027417 -
Trme5548g00001 262 Pfam ABC-2 type transporter 125 193 IPR043926 GO:0140359
Trme5548g00001 262 Gene3D - 1 161 IPR027417 -
Trme5548g00001 262 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 1 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5548g00001 Trme-Chr5548 256 1741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5548g00001 1 103 Calmodulin-binding Proteins AT2G36910 35.238 4.45e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5548g00001 K05681 - gmx:100790102 395.201