Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme553757g00001 ATGTCATTTTCATCAGGAATTGAACTAGGAGAAGAAGCCAATATTGCTGAGGAAGATTTATCTGATGATGGATCACAAGCTGGTGAGAAGAAGAGGAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAAAGTTTTGAGCTTGGTAATAAGCTTGAGCCTGAGAGGAAAATGCAGCTTGCAAGAGCTCTAAATTTGCAGCCAAGACAAGTTGC 215 0.4093 MSFSSGIELGEEANIAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALNLQPRQVA 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme553757g00001 72 Gene3D - 21 72 - -
Trme553757g00001 72 ProSiteProfiles 'Homeobox' domain profile. 25 72 IPR001356 GO:0003677
Trme553757g00001 72 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 19 72 IPR045224 GO:0003700
Trme553757g00001 72 SUPERFAMILY Homeodomain-like 22 71 IPR009057 -
Trme553757g00001 72 CDD homeodomain 30 71 IPR001356 GO:0003677
Trme553757g00001 72 MobiDBLite consensus disorder prediction 1 36 - -
Trme553757g00001 72 Pfam Homeodomain 30 71 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme553757g00001 Trme-Chr553757 58 272 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme553757g00001 7 72 Homeobox Transcription Factor Family AT1G69780 81.818 1.20e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trme553757g00001 Homeodomain 4.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme553757g00001 K09338 - gmx:100808033 132.494