Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme55363g00001 ATGGGATTAGGATTGTTCAAGGCTTTTTTTTGTTGTACCACAAATCAAGATATTCCCATTGTTTCCTCCGACTCAGAGTCCTCTCCTCGGCATAGCTCTGGCTATGGCTACAAACAACCAATGTTGCCAATTAGTCCCAAAAAATCTCCATCTTCTACTAGTAATCCACAAATTGGACAAATTCTAGGGAAACCATACGTTGTAATAACCCAAATGTACGAGATGAAGAAAGAGCTCGGACGAGGTCAATCAGGCGTGACATATTTATGTACAGAGAAAAGAACGGGGAGAGAATACGCGTGCAAATCGATATCAAGGGCAAAACTGTTGAGCGATCAAGAGATAGAAGATGTAAGAAGAGAGGTTATGATTCTGCAACATCTCTCGGGGCAACCGAATATAGTTGAATTCAGAGGAGCTTATGAGGACAAACAGAATGTGTATTTGGTGATGGAGGTTTGCAAAGGAGGTGAACTTTTCGATCGAATTATTGCTAAAGGGAACTATACCGAGCGTGAAGCTGCTACTATCATGAGACAGATTGTGAATGTGGTGCATGTGTGTCATTTCATGGGTGTTATGCATCGTGATCTTAAGCCTGAGAATTTCTTACTTGCTTCACAGGATGAGAATGCTACAGTTAAAGCTACTGATTTTGGACTCTCCATTTTCCTTGAAGAAGGTACCTATTTATTAGTTATTACCACTTCTACTTTATTTGGTCAATAG 729 0.4033 MGLGLFKAFFCCTTNQDIPIVSSDSESSPRHSSGYGYKQPMLPISPKKSPSSTSNPQIGQILGKPYVVITQMYEMKKELGRGQSGVTYLCTEKRTGREYACKSISRAKLLSDQEIEDVRREVMILQHLSGQPNIVEFRGAYEDKQNVYLVMEVCKGGELFDRIIAKGNYTEREAATIMRQIVNVVHVCHFMGVMHRDLKPENFLLASQDENATVKATDFGLSIFLEEGTYLLVITTSTLFGQ 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme55363g00001 242 SMART serkin_6 73 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme55363g00001 242 MobiDBLite consensus disorder prediction 21 57 - -
Trme55363g00001 242 ProSiteProfiles Protein kinase domain profile. 73 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme55363g00001 242 Gene3D Phosphorylase Kinase; domain 1 75 158 - -
Trme55363g00001 242 SUPERFAMILY Protein kinase-like (PK-like) 70 234 IPR011009 -
Trme55363g00001 242 Pfam Protein kinase domain 73 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme55363g00001 242 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Trme55363g00001 242 FunFam Calcium-dependent protein kinase 1 75 158 - -
Trme55363g00001 242 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Trme55363g00001 242 Gene3D Transferase(Phosphotransferase) domain 1 159 241 - -
Trme55363g00001 242 PANTHER SERINE/THREONINE-PROTEIN KINASE 68 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme55363g00001 Trme-Chr55363 37 765 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme55363g00001 36 240 EF-hand Containing Proteins AT1G50700 61.463 9.21e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme55363g00001 Pkinase 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme55363g00001 K13412 - gmx:100816157 328.946