Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme55355g00001 ATGAAGTATCTTCCAGGAAAAGGTGCTCTTAGGAAGATAATTGACAGAGCTCAAGAGTTATATAGTCCTGATCTTGATACCATTGCTTATGATGGAGAACAAACTCTGTTCACTATTGCCCTTTTAGAAAAGTCTGAGTTTAAAGTTGATCTTGATACTATTGTCACAAACAGGAACAATGTAAACTCCAGTAGTCCTGAAGGGAATGGAAGTCCAAATGCTCCTAATAAGAAGAGGCAGAAAGCATCCTATGGAACAAAGAGTTATGTGGTGCAAATCCGCTATGAGTCCACAATTTCACTGCGGGACATTGCCAATGCCTTGATGGAGCACAAAACTGAGAATAATATAGCCAGGGTTCTTGATATTATCTTGAGGCAACATGCTGCCAAGCAAGACTGTCTGCTTGTGCGACAAAATTTCTTCCATAACGATGTTTGTAGTTTCTTTACTGTTGGAGATGGTGTATCTGGATGCAGAGGGCATCATCCCATCTTTAGAAACACACAAAGTGGTCTGTCTTTGAATATAG 532 0.4004 MKYLPGKGALRKIIDRAQELYSPDLDTIAYDGEQTLFTIALLEKSEFKVDLDTIVTNRNNVNSSSPEGNGSPNAPNKKRQKASYGTKSYVVQIRYESTISLRDIANALMEHKTENNIARVLDIILRQHAAKQDCLLVRQNFFHNDVCSFFTVGDGVSGCRGHHPIFRNTQSGLSLNI 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme55355g00001 177 Pfam N-terminal domain of argonaute 8 125 IPR032474 -
Trme55355g00001 177 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 12 177 - -
Trme55355g00001 177 MobiDBLite consensus disorder prediction 58 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme55355g00001 Trme-Chr55355 101 805 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme55355g00001 29 177 Eukaryotic Initiation Factors Gene Family AT5G43810 28.105 5.46e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme55355g00001 K11593 - cit:102622330 167.933