Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme55354g00001 ATGTCCGATGATTTAGAGAAAATGGCGAACTCTCTGGCGAAGGATACAGTGGTGATAACCGTTGGCGAACCTAACAGACCAAATAAAGCTGTGAAGCAGCTAGCTATTTGGGTCGAATCGAAACAAAAGAAGCAGAAACTGTTTGACATTTTAACAAGCCAGAAACATTTTAAGCCACCTGTTGTAATATANNNNNNNNNNANNNNNNNNNNANNNNNNNTGGCAAATGCAATTACAGTTTCAACAGGAATTAAATCTGTGTCAATTCACGGCGAGAAGTCTATGACAGTAAGGAGAGAAATAATGCAGTCATTTATGGTCGGAGAGTTCCCGGTGATTGTGGCTACCGGAGTTTTGGGTAGAGGGGTTGATTTATTAGGCGTAAGACAAGTGATTGTGTTCGACATGCCGAATTCCATTAAGGAATATGTACATCAAATAGGAAGGGCTTCTAGAATGGGAGAGGAAGGTCAAGCCATAGTTTTTGTGAATGACGAGAATAGGAATGTTTTTGCAGAGTTAGTTGATGTACTAAAGTCGGGTGCAGCGGCTATACCTCGGGAACTTATCAATTCACAGTATACCACAGGATTTGTCTCTGGTGGCAAAGGTTCAAAGAAGAGAAAGCACAGATGA 636 0.3962 MSDDLEKMANSLAKDTVVITVGEPNRPNKAVKQLAIWVESKQKKQKLFDILTSQKHFKPPVVIXXXXXXXXXXXANAITVSTGIKSVSIHGEKSMTVRREIMQSFMVGEFPVIVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQAIVFVNDENRNVFAELVDVLKSGAAAIPRELINSQYTTGFVSGGKGSKKRKHR 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme55354g00001 211 SMART helicmild6 72 154 IPR001650 -
Trme55354g00001 211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 189 IPR027417 -
Trme55354g00001 211 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 3 189 - -
Trme55354g00001 211 Pfam Helicase conserved C-terminal domain 76 154 IPR001650 -
Trme55354g00001 211 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 4 193 IPR001650 -
Trme55354g00001 211 Gene3D - 17 195 IPR027417 -
Trme55354g00001 211 CDD SF2_C_DEAD 31 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme55354g00001 Trme-Chr55354 38 673 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme55354g00001 33 194 Eukaryotic Initiation Factors Gene Family AT5G11170 29.448 1.51e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme55354g00001 K19466 - gmx:100781473 296.975