Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5532g00001 ATGANGGTTATAAGCTTGTTGAGACAATCTCATGGAAACAACAATGTCTCAACGGTTGCTATTGTTGGAATTGGTGGTTTGGGAAAGACGGCTCTTGCTCAATTGGTATATAATGATAGTGAAGTAAAGGAGATTTTCAAAAATATTATGTGGGTATGTGTCTCTGGAAACTTTGATGTCAAAATTATTCTGAAGAACATGTTGAAGTCATTATTACCCAAGGAAAAAATTGATGATACATTATCATTGGACAACTTGCAAAATATGCTTCGTGACAAATTAACTGGTAAGAGATGCTTGTTAGTTCTTGATGATGTTTGGAGTGAGAGTTTTGAAAAATGGGTTCAGTTGAGGACTTACTTGATGTGTGGTGCTCAAGGCAGCAAGGTTTTAGTGACAACTCGTAATAAAACTGTGGCACAAACAATGGGTGTAAGTGACCCCTATGTTTTGAATGGTTTGACTCTAGAAGAATCTTGGGGTTTATTGAAAAACTTCATTACATATGGGGATGAGACCACCAGTGGAGTAAATCAAAATCTAGAATCAATTGGTAAGAAGATAGCTGAGAAGTGCAGTGGTGTGCCGCTAGCAATCAGAACACTAGGAGGTCTATTGCAAGGTAAAAGTGAAGAAAGGGAATGGATTGACATGTTACAAGGTGACTTTTGGAAATTATGTGAAGACGAAGAAAGCATCATGCCAGTGTTGAAACTGAGTTACCAAAACTTGTCTCCTCAACTACGACAATGTTTTGCTTACTGCTCTTTATATCCTAAGGATTGGAAAATAAAGAAGGATGAGTTGATTCAACTGTGGATGGCACATGGTTATCTCGAATGTTCAGATGAAAATAGGTCCATGGAAGACATCGGTAACCAATACGTGAAGATTTTCTTGATGAAGTCTTTTTTCCAAAATGTTGATATTAATAGATGCGGTGATATACTTAGTTTCAAAATGCATGATTTAATACATGATCTTGCAATGAAAGTAGCCGGCAACGATTGTTGCTACTTGAACAGTGAGACAAAAAAACTTGTAGGAAGTCCCATGCATATAATGTTGGAAAGTGATGCTTTTGGTTTGTTGGAGTCATTGGATGCAAGCAGGATGCGAATTTTAATTTTAACAAATAAGTTGAATGAGAAGGAATTATCTATCATCTCAAAATTCAAATACTTACGTGTCTTGGAGCTATGGGATTGTTCTTTAAGTAAGATGTGTGATTCAATTGGAAAGATGAAGCATTTAAGATATCTTAACTTGTCGCACTGCGAAGGACTAGGAAGTCTTTCCAAATCCATAAGCAATCTTGTTTGCTTACAAACACTATTATTGAACCGCTCTAAAGTTGAATTTTCTACAAAAGATATCTCAAAACATATCAATTTGAGACATTTTAATATTGAAAATTTAAAAGCTTCGGAACCAAAGAAGACAACATCTCAATTTGGAAAATTAGGTGTGGGGCGACAAAATAATAGTGTCATTTTTTCAAATTGGCTTTCTCCACTCACAAATATTGTTGAAATTTCTCTCGGTGGTGATTCTTCTTCTGGTTTGAAGTGTCTCCCACCAATGGAACGTCTCCCGTTTCTTAAGTCACTTAGTATACGCGATCTTGCTAACTTGGAATTCATATATTATGACGAGCCTCTTTTATCTGAATCATTTTTCCCATCTTTGGAGAAACTCACAATTATCATGTGTAGGAAGCTGAGGGGATGGACAAGGATGAGGGATGATGTCAATGATGATGATGATAACTCTTCACAGTCATACCATCTCTCCTTTCCTCGTCTTTCTGAATTATATATATCTAATTGTTCTTGGTTGACTCACATACCTACTTTTCCTAAACTTGACAAGGAATTGACTTTTAGATTTGTTGGTATTTCAAGTGTGAGTTGA 1914 0.3605 MXVISLLRQSHGNNNVSTVAIVGIGGLGKTALAQLVYNDSEVKEIFKNIMWVCVSGNFDVKIILKNMLKSLLPKEKIDDTLSLDNLQNMLRDKLTGKRCLLVLDDVWSESFEKWVQLRTYLMCGAQGSKVLVTTRNKTVAQTMGVSDPYVLNGLTLEESWGLLKNFITYGDETTSGVNQNLESIGKKIAEKCSGVPLAIRTLGGLLQGKSEEREWIDMLQGDFWKLCEDEESIMPVLKLSYQNLSPQLRQCFAYCSLYPKDWKIKKDELIQLWMAHGYLECSDENRSMEDIGNQYVKIFLMKSFFQNVDINRCGDILSFKMHDLIHDLAMKVAGNDCCYLNSETKKLVGSPMHIMLESDAFGLLESLDASRMRILILTNKLNEKELSIISKFKYLRVLELWDCSLSKMCDSIGKMKHLRYLNLSHCEGLGSLSKSISNLVCLQTLLLNRSKVEFSTKDISKHINLRHFNIENLKASEPKKTTSQFGKLGVGRQNNSVIFSNWLSPLTNIVEISLGGDSSSGLKCLPPMERLPFLKSLSIRDLANLEFIYYDEPLLSESFFPSLEKLTIIMCRKLRGWTRMRDDVNDDDDNSSQSYHLSFPRLSELYISNCSWLTHIPTFPKLDKELTFRFVGISSVS 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5532g00001 637 Gene3D - 153 240 IPR042197 -
Trme5532g00001 637 Gene3D - 241 332 IPR036388 -
Trme5532g00001 637 Gene3D - 1 147 IPR027417 -
Trme5532g00001 637 FunFam Probable disease resistance protein At1g63360 241 331 - -
Trme5532g00001 637 Gene3D Ribonuclease Inhibitor 349 635 IPR032675 -
Trme5532g00001 637 PANTHER DISEASE RESISTANCE PROTEIN RP 9 617 IPR044974 GO:0006952
Trme5532g00001 637 SUPERFAMILY L domain-like 320 621 - -
Trme5532g00001 637 PRINTS Disease resistance protein signature 192 206 - -
Trme5532g00001 637 PRINTS Disease resistance protein signature 18 33 - -
Trme5532g00001 637 PRINTS Disease resistance protein signature 93 107 - -
Trme5532g00001 637 PRINTS Disease resistance protein signature 413 429 - -
Trme5532g00001 637 Pfam NB-ARC domain 13 243 IPR002182 GO:0043531
Trme5532g00001 637 FunFam Probable disease resistance protein At1g61300 3 148 - -
Trme5532g00001 637 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 255 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5532g00001 Trme-Chr5532 38 1951 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5532g00001 15 346 WRKY Transcription Factor Family AT5G45050 24.928 3.91e-12 67.8