Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5531g00001 ATGATTGAACTCAAGGTTGGGAACTTTATGCACTTTATAAGCCGATTTATAGCGGGCTTTATCATCGGCTTTTTCAGAGTTTGGCAGATCAGTATAGTGACACTTGCTATTGTTCCTTTGATTGCTATTGCTGGAGGTCTTTATGCATATGTGACATTTGGGCTTATTGCAAAAGTTCGTAAATCATATCTAAGGGCAGGTGAAATCGCTCAGGAGGTGATAGGAAATGTCAGAACCGTACAAGCATTTGGAGGAGAACAAAGAGCGGTGATATCATACAAAGTGGCTCTGAGGAACACATATAAGAATGGTCGAAAAGCAGGTTTAGCAAAGGGTCTAGGACTAGGCTCTATGCATTGTGTCCTTTTTCTATCATGGGCTCTGCTTGTTTGGTTTACCAGCATTATTGTTCACAAGGGCATCGCCAATGGTGGAGTAGCTTTCACTACCATGCTCAATGTGGTTATCTCTGGCCTGTAA 480 0.4208 MIELKVGNFMHFISRFIAGFIIGFFRVWQISIVTLAIVPLIAIAGGLYAYVTFGLIAKVRKSYLRAGEIAQEVIGNVRTVQAFGGEQRAVISYKVALRNTYKNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIIVHKGIANGGVAFTTMLNVVISGL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5531g00001 159 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 159 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme5531g00001 159 PANTHER ABC TRANSPORTER B FAMILY 4 158 IPR039421 -
Trme5531g00001 159 Pfam ABC transporter transmembrane region 2 157 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme5531g00001 159 Gene3D ABC transporter type 1, transmembrane domain 1 159 IPR036640 GO:0005524|GO:0016020
Trme5531g00001 159 SUPERFAMILY ABC transporter transmembrane region 6 152 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5531g00001 Trme-Chr5531 67 1128 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5531g00001 2 159 Calmodulin-binding Proteins AT2G36910 44.937 8.54e-42 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5531g00001 K05658 - gmx:100809752 255.373