Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5530g00001 ATGTGTTATTCTTCTTCAAATGATCAAGAACCTGATCCAGAGGCAATAGCACAAATGAAGGAAATGATGTATAGAGCTGCAGCATTTAGACCAGTGAATTTTGGAATGGATGATATTGATGTGATTGAAAAAAAGCCAAAGAGGAAGAATGTTAAGATATCAAATGATCCACAAACTGTGGCTGCAAGACATAGAAGGGAAAKAATAAGTGATARGATTAGGGTTTTGCAAAAGATTGTTCCYGGTGGAAACAAAATGGACACTGCTTCAATGCTTGATGAGGCTGCAAATTATCTCAAGTTTTTAAGGTCACAAGTTAAGGCACTTGAAAGTTTAGGGAACAAAGTTAATTCAATGGATTGTAATCCAACTAGTATTGCTTTCTCTTTTAACCCTTCTTTTCACATGCAAATTCCTAATCACAATAATCATCATTCACAGGGTTAA 447 0.349 MCYSSSNDQEPDPEAIAQMKEMMYRAAAFRPVNFGMDDIDVIEKKPKRKNVKISNDPQTVAARHRREXISDXIRVLQKIVPGGNKMDTASMLDEAANYLKFLRSQVKALESLGNKVNSMDCNPTSIAFSFNPSFHMQIPNHNNHHSQG 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5530g00001 148 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Trme5530g00001 148 Pfam Helix-loop-helix DNA-binding domain 63 102 IPR011598 GO:0046983
Trme5530g00001 148 Coils Coil 92 112 - -
Trme5530g00001 148 CDD bHLH_AtIND_like 54 112 - -
Trme5530g00001 148 SMART finulus 59 108 IPR011598 GO:0046983
Trme5530g00001 148 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 5 135 IPR045843 GO:0003700|GO:0006355
Trme5530g00001 148 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 59 112 IPR036638 GO:0046983
Trme5530g00001 148 Gene3D - 57 121 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5530g00001 Trme-Chr5530 67 513 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5530g00001 6 144 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 67.361 2.42e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme5530g00001 HLH 5.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5530g00001 - - psat:127076443 242.276