Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5528g00001 GTTTGCTTGATTTCCGCTACGCTGCCTCATGAAATTTTGGAGATGACAAATAAGTTTATGACAGATCCTGTGAGGATCCTTGTAAAACGTGATGAATTGACGTTGGAGAGCATCAAGCAATATTTTGTTGCGGTTGAAAGGGAGGAATGGAAGTTTGATACTCTTTGTGATCTTTATGATCATGTTACCATCACTCAAGCTGTTGTGGACTGGTTAGCTGAAAAAATGCATAACAATAATTTCACCGTCTCATCAATGCATGGTGACATGCCTCAAAGAGAAAGAGATGCAATTATGGGAGAATTTTGTGCTGGAACAACCCGAGTATTGATAACAACCGATGTTTGGGCTCGTGGCCTTGATGTACAGCAGATTGCTTAA 381 0.4042 VCLISATLPHEILEMTNKFMTDPVRILVKRDELTLESIKQYFVAVEREEWKFDTLCDLYDHVTITQAVVDWLAEKMHNNNFTVSSMHGDMPQRERDAIMGEFCAGTTRVLITTDVWARGLDVQQIA 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5528g00001 126 SMART helicmild6 70 126 IPR001650 -
Trme5528g00001 126 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 125 - -
Trme5528g00001 126 Gene3D - 30 126 IPR027417 -
Trme5528g00001 126 Pfam Helicase conserved C-terminal domain 69 125 IPR001650 -
Trme5528g00001 126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 125 IPR027417 -
Trme5528g00001 126 CDD SF2_C_DEAD 38 125 - -
Trme5528g00001 126 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 37 126 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5528g00001 Trme-Chr5528 797 1513 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5528g00001 1 126 Eukaryotic Initiation Factors Gene Family AT3G19760 76.866 3.94e-72 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5528g00001 K13025 - gmx:100795032 232.261