Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5524g00001 GTAGTTGTGGAGAAGAAATGGAGAGAAGTAGGTAGTGTATTTAGATTCTCATCTACAACTACAAGTGCTTCATTTGTACTAAGAAAACATTACTTGAATCTTCTTTACCATTACGAACAAGTTCACTTCTTCAAAGTTCAGGGTCCTATATTCACTCCCTCAGCAGATGCGTTTTCTGGAAATAGTCCCTCGTGGCGACCTGAATTGGCTATTGTTCAATACTCACCTAAGATGGTAAATGATAGTGCTGAATCTCATGATGAAGTGAATGTAGATAGTTCATGTCTTTTGGGAAAAGGAACAATAGAAGGAAAATTTGACTGTGGTTATATAGTGTCAGTAAAATTGGGTTCAGAGGTTCTGAAAGGGGTGCTTTACCATCCAGAACAAGTGGTTGCTGCTCCATCATTGGTTCCACAACATGCTATTGTACCATTCAATCTTCAATCTCATAGTTCTGGTAGGAGGAAGAGAAGAAAAAGAAACTGGGACCCAAACTATCCAAAACCAAATAGGAGTGGCTATAACTTTTTCTTTGCTGAAAAACATTACAAGCTCAAAGAACTCTACCCAAACAGAGAAAGGGAATTTACTAAAATGATTGGTCAATCCTGGAATAGTCTTAGCCCTGAAGAAAGAATGATTTACCAAAACATTGGCTTAAGAGACAAAGAAAGGTACAAAAGAGAATTGACAGAGTACAAAGAGAAAATGAAGGTTGGGCAGACTGAAGAACTTGGGCTTCCATAA 750 0.38 VVVEKKWREVGSVFRFSSTTTSASFVLRKHYLNLLYHYEQVHFFKVQGPIFTPSADAFSGNSPSWRPELAIVQYSPKMVNDSAESHDEVNVDSSCLLGKGTIEGKFDCGYIVSVKLGSEVLKGVLYHPEQVVAAPSLVPQHAIVPFNLQSHSSGRRKRRKRNWDPNYPKPNRSGYNFFFAEKHYKLKELYPNREREFTKMIGQSWNSLSPEERMIYQNIGLRDKERYKRELTEYKEKMKVGQTEELGLP 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5524g00001 249 ProSiteProfiles ARID domain profile. 1 43 IPR001606 GO:0003677
Trme5524g00001 249 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 1 242 - -
Trme5524g00001 249 SUPERFAMILY ARID-like 1 51 IPR036431 GO:0003677
Trme5524g00001 249 Gene3D High mobility group box domain 151 246 IPR036910 -
Trme5524g00001 249 SMART hmgende2 167 236 IPR009071 -
Trme5524g00001 249 Coils Coil 224 244 - -
Trme5524g00001 249 Pfam HMG (high mobility group) box 168 235 IPR009071 -
Trme5524g00001 249 Gene3D - 1 49 IPR036431 GO:0003677
Trme5524g00001 249 MobiDBLite consensus disorder prediction 149 168 - -
Trme5524g00001 249 SUPERFAMILY HMG-box 165 238 IPR036910 -
Trme5524g00001 249 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 168 235 IPR009071 -
Trme5524g00001 249 CDD HMG-box_AtHMGB9-like 168 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5524g00001 Trme-Chr5524 233 1620 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5524g00001 1 240 ARID Transcription Factor Family AT1G76110 60.484 2.34e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trme5524g00001 HMG_box 1.7e-11 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5524g00001 - - gmx:100784746 406.371