Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme55232g00001 TGGGTGAGAGGTAAGTGTATTGGTAAAGGAGCGTTTGGCGTTGTGAACTTAGCTTATTCAAAAAGCGATTCTAGTGTTTTCGCGGTGAAATCTGTTGATTTAAAAACAGGTCATCCAAATCAGTTACAAGCTTTGGAGAATGAAATTCAGATATTGAAACGGTTATCTTCTTATTCTTCTTGTTCTTCGCACGTGGTAGGTTTTTACGGAGAAGATGTCACGTGTGAAGGAGAAGGAACTACGACGTCGTTTAAGAATCTGCACTTGGAGTATATGCCAGGTGGCACCGTTGCTGACATGGATCGTGCTGACGTGGACGAACGGTTAGTTAGAAGCTTCGCGTGGTGTCTTGTTAACGCGCTGAGTGAAATTCACGCGTGTGGTGTTGTTCACTGTGATGTGAAAGGGAGAAATGTTCTCGTCGCCGGTGATGGTTCCATCGTTAAACTTGCTGATTTTGGTTCGGCGGTGGAATTTGAATTCTCCGGTGGAGAGTGTGAAGTTCCGCGTGGAAGTCCGATGTGGATGGCGCCGGAGGTAATTCGCCGGGAGTATCAAGGACCGGARTCCGAYGTGTGGTCGCTKGGATGTACTTTGATTGAGATTCTCACCGGAAAATCGCCGTGGGAGGATCRCGGTATCGATACSTTGAGTCGAATTGGATTTTCCGATGAGTTACCGGAGTTTCCGAGTAGTTTATCGGAGCTTGGAAGAGATTTTCTCGAGAAGTGTCTCCAAAGAGATCGGAACCGTAGATGGAGATGTGATCAGCTACTTCAGCATCCATTTCTATTACCGTGTGATCGCGTTGTGGAATCGTCACCTCGTTGCGTTTTGGATTGGGTTGACTCGCAATTCACCGAGTCAGAAAACGAGTTCGAGTTCGAATTAGAATTCGGAAAAGAAAATGAAGTGAA 917 0.4591 WVRGKCIGKGAFGVVNLAYSKSDSSVFAVKSVDLKTGHPNQLQALENEIQILKRLSSYSSCSSHVVGFYGEDVTCEGEGTTTSFKNLHLEYMPGGTVADMDRADVDERLVRSFAWCLVNALSEIHACGVVHCDVKGRNVLVAGDGSIVKLADFGSAVEFEFSGGECEVPRGSPMWMAPEVIRREYQGPESDVWSLGCTLIEILTGKSPWEDXGIDTLSRIGFSDELPEFPSSLSELGRDFLEKCLQRDRNRRWRCDQLLQHPFLLPCDRVVESSPRCVLDWVDSQFTESENEFEFELEFGKENEV 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme55232g00001 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Trme55232g00001 305 ProSitePatterns Protein kinases ATP-binding region signature. 7 30 IPR017441 GO:0005524
Trme55232g00001 305 ProSiteProfiles Protein kinase domain profile. 1 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme55232g00001 305 SUPERFAMILY Protein kinase-like (PK-like) 2 278 IPR011009 -
Trme55232g00001 305 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 278 - -
Trme55232g00001 305 SMART serkin_6 1 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme55232g00001 305 CDD STKc_MAPKKK 1 264 - -
Trme55232g00001 305 Gene3D Transferase(Phosphotransferase) domain 1 1 298 - -
Trme55232g00001 305 Pfam Protein kinase domain 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme55232g00001 305 FunFam Serine threonine protein kinase putative 1 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme55232g00001 Trme-Chr55232 1 917 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme55232g00001 1 283 MAP Kinase Kinase Kinase AT2G30040 62.238 1.82e-120 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trme55232g00001 Pkinase 4.9e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme55232g00001 - - tpra:123921217 553.132