Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5520g00001 ATGATGTCACTTTCACCTAACATAGGAGGAATAGGATCTCCATATCCATGGCTTAGTAGAGAATTGAAATCTGAAGAAAGGGGTTTGTATTTGATCCATTTGTTACTAACTTGTGCAAACCATGTAGCTTCTGGTAGTCTTGAAAATGCAAACACAACACTTGAACAGATTTCTCAGCTTGCATCTCCTGATGGAGATACTATGCAGAGAATTGCTGCATATTTCACTGAAGCACTTGCTGTTAGGATACTCAAAACTTGGCCTGGACTTCATAGAGCCTTGAATTCGACGAGAATTATCATGCTTTCTGAAGAAATTATGGTTCAGAAGTTCTTTTTTGAGCTTTTCCCTTTCTTGAAGGTTGCATATATTTTGACAAATCAAGCTATTGTTGAATCTATGGAAGGTGAGAAAATGGTTCATATTATTGATCTAAATGCTGCTGAGCCTGCACAATGGATTGCTCTTTTACAAGTTTTGAGTGCTCGTCCCGAAGGTCCTCCTCATTTGAGAATCACAGGGATTCATCAACAGAAAGAGGTTTTGGATCAAATGGCTCATAAGCTTTCGGAAGAAGCTGAAAAATTGGATATACCATTCCAATTCAATCCTGTTGTTAGCAAGCTAGAGAATCTCGATTTCGACAAACTTCGTGTTAAAACTGGCGAGGCGCTTGCAATAAGTTCTATTCTGCAATTACATTCCCTTTTGGCTTTGGATGATGAATCATCATCCTCAAGGAGAAAAACNNNNNNNNTNNNNNNNNNNTCAAATGGACTTCACCTACAAAAAGTCATGCTTATGAACCAAAGCGCGTCATTAGGCGATTTACTTGAAAAAGATATGGTTAATGGATATACTCCAAGTCCCGATTCAACATCCTCGTCGTCGCCAGCATCTTCAACCGCTTCATTGAATGCAGAGAGCTTTCTCAATGCCTTGTGGAGTTTGTCGCCGAAAGTCATGGTTGTAACCGAACAAGACTCTAATCACAACGGTTCAACTCTGATGGAGAGGCTGCTTGAAGCTCTATATTCTTATGCAGCATTGTTTGATTGTTTGGAATCAACTGTGTCAAGAACGTCGCTAGAAAGATTTAAGATTGAGAAGATGCTGTTTGGTGAGGAAATCAAGAACATTATTGCTTGTGAAGGAGCTGAAAGAAAAGAAAGACATGAAAAGCTTGATAAGTGGTTTATGAGACTTGATTTGTGTGGTTTTGGTAATGTGCCTTTAAGCTATTATGGTATGTTGCAGGCAAGAAGGTTTCTGCAGAGTTATGGTTGTGAGGGATACAAAATGAGAGAAGAAAATGGTTGTGTAGCAATTTGCTGGCAAGATAGGTCATTGTTTTCAACAACAGCTTGGAGAGCTAGGAAGTGA 1383 0.3883 MMSLSPNIGGIGSPYPWLSRELKSEERGLYLIHLLLTCANHVASGSLENANTTLEQISQLASPDGDTMQRIAAYFTEALAVRILKTWPGLHRALNSTRIIMLSEEIMVQKFFFELFPFLKVAYILTNQAIVESMEGEKMVHIIDLNAAEPAQWIALLQVLSARPEGPPHLRITGIHQQKEVLDQMAHKLSEEAEKLDIPFQFNPVVSKLENLDFDKLRVKTGEALAISSILQLHSLLALDDESSSSRRKTXXXXXXSNGLHLQKVMLMNQSASLGDLLEKDMVNGYTPSPDSTSSSSPASSTASLNAESFLNALWSLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAALFDCLESTVSRTSLERFKIEKMLFGEEIKNIIACEGAERKERHEKLDKWFMRLDLCGFGNVPLSYYGMLQARRFLQSYGCEGYKMREENGCVAICWQDRSLFSTTAWRARK 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5520g00001 460 Pfam GRAS domain family 31 457 IPR005202 -
Trme5520g00001 460 ProSiteProfiles GRAS family profile. 22 457 IPR005202 -
Trme5520g00001 460 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 27 453 IPR005202 -
Trme5520g00001 460 MobiDBLite consensus disorder prediction 286 300 - -
Trme5520g00001 460 MobiDBLite consensus disorder prediction 281 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5520g00001 Trme-Chr5520 83 1465 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5520g00001 2 460 GRAS Transcription Factor Family AT1G50420 67.382 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme5520g00001 GRAS 2.5e-139 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5520g00001 - - tcc:18589932 716.457