Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme55165g00001 TATAATGCACCAGAATGCACAAAACCATCAGCCTATACCTTGAAGAGCGATATATACAGTTTTGGTGTAGTGATGCTCGAACTTTTGACAGGTCGAAAGCCTCTAGATAGTTCAAAGCCAAAAGCAGAGCAATGTCTCGTTCGTTGGGCTACCCCGCAGCTTCATGACATAAATGCTATGGAAAAAATGGCATTGGTGCGATTAGTTCAGGATTCAAATATGAAAATGAGAGAGGATCTTGGTGCCGGTCGGATGGATGATTATGATGATTGA 273 0.4212 YNAPECTKPSAYTLKSDIYSFGVVMLELLTGRKPLDSSKPKAEQCLVRWATPQLHDINAMEKMALVRLVQDSNMKMREDLGAGRMDDYDD 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme55165g00001 90 Pfam Protein tyrosine and serine/threonine kinase 1 41 IPR001245 GO:0004672|GO:0006468
Trme55165g00001 90 ProSiteProfiles Protein kinase domain profile. 1 90 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme55165g00001 90 PANTHER OS01G0253100 PROTEIN 1 72 - -
Trme55165g00001 90 SUPERFAMILY Protein kinase-like (PK-like) 1 79 IPR011009 -
Trme55165g00001 90 Gene3D Transferase(Phosphotransferase) domain 1 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme55165g00001 Trme-Chr55165 193 818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme55165g00001 1 63 Strubbelig Receptor Gene Family AT3G13065 76.190 7.57e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trme55165g00001 PK_Tyr_Ser-Thr 6.6e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme55165g00001 - - psat:127107173 142.51