Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme55149g00001 ATGTATGCTTCTACTTCCATTACTTCACCACTCTTCAATGAGCTTCTTGTGGAATCTCACATAAGAAGGTTACTCTTCCAAGACCCAGTTGATCATCAATCACTTAAAATCAACTCCCCTGTTTCCACAAACAACCATAATTCAACAGACTCATATTTTGGAGCTCGTGAATTTGATTCGAAAGTTGTAATGATACTTGCAGTCATTTTATGTGCTTTTATTTGCTCGCTTGCATTAAACTCGATCATAAGGTGTGCCTTAAGGTTTACAAACGTAGCCATCAACAACGACTCTTCTTCGAGCAGCAACCCTTTACCTCAATTGGTCAACAAAGGAATCAAGAAGAAAGTTCTCAAGAGATTCCCAACATTGAGCTATTCAAGTGAGTTGAAACTACCAAATTTGGATACAGAGTGTATGATATGTCTATCAGAGTTCACAAAGGATGAAAAACTGCGCATTTTGCCTAAATGCGACCATGGTTTTCATGTTACTTGCATTGACAAATGGCTGAAGGAACACTCGTCGTGTCCCAAGTGTAGACAATGTCTTCGTGAAAATTGTCACAAGACTGGTGGGTCACAGGTGCAACCAATTTCGTTGCCAGTGCCAGAAACCATTATAAGGATCCAACCATTAGAGCATGAAGATTTAGAACGTAACTATAGGGAAATATAA 678 0.3909 MYASTSITSPLFNELLVESHIRRLLFQDPVDHQSLKINSPVSTNNHNSTDSYFGAREFDSKVVMILAVILCAFICSLALNSIIRCALRFTNVAINNDSSSSSNPLPQLVNKGIKKKVLKRFPTLSYSSELKLPNLDTECMICLSEFTKDEKLRILPKCDHGFHVTCIDKWLKEHSSCPKCRQCLRENCHKTGGSQVQPISLPVPETIIRIQPLEHEDLERNYREI 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme55149g00001 225 CDD RING-H2_EL5-like 138 181 - -
Trme55149g00001 225 FunFam RING-H2 finger protein ATL73 98 186 - -
Trme55149g00001 225 SUPERFAMILY RING/U-box 117 187 - -
Trme55149g00001 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 186 IPR013083 -
Trme55149g00001 225 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Trme55149g00001 225 PANTHER RING-H2 FINGER PROTEIN ATL78 17 217 IPR044602 GO:0016567|GO:0016740
Trme55149g00001 225 SMART ring_2 139 180 IPR001841 -
Trme55149g00001 225 Pfam Ring finger domain 138 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme55149g00001 Trme-Chr55149 200 877 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme55149g00001 47 190 C3H Transcription Factor Family AT1G76410 46.897 9.78e-40 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme55149g00001 K19040 - gmx:100780127 299.286