Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme55138g00001 ATGAAAAATGGAAGCTTAGAACAATGGCTGCATCCCGAGCTTTTAAATGTAGAGTATCCAACAACATTGGACCTCGGTCAAAGATTAAACATCATTATCGATATTGCTTCTGCATTACATTATCTTCATCAAGAATGTGAGTTATTGGTCCTTCATTGTGGTCTAAAGCCAACCAATGTCCTTCTTGACGATGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTCTTCTCAACCATTGGCGATACCTCTCATGAGAATACTAGTACAATTGGAATAAAAGGAACTGTTGGCTATACTCCACCAGCTTTGGAATCCTTATTTTGGAAATGCTTACCGGTAGAAGACCCACCGATGAATTTTCTGAAGATGGTCAAAATCTACATAACTTTGTTGTAA 405 0.3852 MKNGSLEQWLHPELLNVEYPTTLDLGQRLNIIIDIASALHYLHQECELLVLHCGLKPTNVLLDDDMVAHVSDFGIARLFSTIGDTSHENTSTIGIKGTVGYTPPALESLFWKCLPVEDPPMNFLKMVKIYITLL 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme55138g00001 134 Pfam Protein kinase domain 2 104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme55138g00001 134 Gene3D Transferase(Phosphotransferase) domain 1 1 110 - -
Trme55138g00001 134 FunFam Os07g0541700 protein 1 98 - -
Trme55138g00001 134 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 104 - -
Trme55138g00001 134 ProSiteProfiles Protein kinase domain profile. 1 134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme55138g00001 134 SUPERFAMILY Protein kinase-like (PK-like) 1 105 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme55138g00001 Trme-Chr55138 316 884 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme55138g00001 1 104 Receptor kinase-like Gene Family AT3G47570 54.206 7.35e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trme55138g00001 Pkinase 1.1e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme55138g00001 - - tpra:123911444 194.897