Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5512g00001 ATGAAAATGCAAGGCTGTGAAGTTGAAGCCATTGGCATAAACTACAAAATCCACACAAACAAAACAGAACACCCTTTTAAAATCTTCAGCAAATCTCCACAACTAGATAATGCCAATGGTCAAGAAATAGAAGAAGAGGAAGAAGCAAGAGTTGAAAAAAGTTGCAGTGGAGTTAGGCATGTACTCAAGAATGTGAGTTTTCAGGCAAGACCATGGGAAATCCTAGCAATTGTTGGACCAAGTGGAGCTGGAAAGTCATCACTACTTGAGATCTTAGCAGGTAAACACAGTCCACAAAAAGGGTCAGTGTTGTTGAACCAAAAGCCTGTTGACAAATCTCAGTTCAGAAAGCTATCAGGTTATGTTACTCAAAAGGACACTTTGTTTCCCTTACTTACAGTTGAAGAAACCATGATGTTCAGTGCAAAACTAAGGCTAAAGCTTCCTCAACAACAACTATGTTCAAGGGTCAAGTCATTGATTCAAGAGCTTGGACTTGATCATGTTGCGGGGACTCGAATTGGTGACGATCGAGTCCGAGGTATATCAGGCGGTGAAAGGCGTAGAGTTTCTATTGGTGTTGAAGTCATACATGATCCAAAAGTTTTGATTCTTGATGAACCAACTTCAGGGCTTGATAGTACTTCAGCTTTGCAAATAATTGATATGCTCAAGGTTATGGCTGAAACTAGGGGAAGAACTATAATACTAAGTATTCATCAACCTGGTTTCAGAATAGTGAAGCTGTTCAATTCATTGTTGTTGTTGGCTAATGGTTCTGTGCTTCATCATGGAACTGCTGAATTACTGAGTTTGAATTTGAGATTGATGGGTCTAGARCTTCCACTACATGTTAATTTAGTTGAATTTGCTATTGATTCCATTGATATCATTCAACAACARCARCAGCAACAATGYCAGGTGGAAACCGAACCGCCGAGACGATTGTTAGGAACAATGCAACAGAAGAAAGGTGGTGATGATGAACAGCAACAACAACAATCAGGTGAGAGTAAAAGTGGTAAGTTCACTTTGCAACAGCTATTTCAACAATCTAAAGTAATTGATGAAGATATCATCAATAGTACTGGAATGGATTTCTCTTATGATTTTGCAAATTCTAGATCGAGTGAAACTATGATTCTAACTCATAGATTCTCCAAAAACATATTTCGTACAAAAGAGCTATTTGCATGTAGGACAATTCAGATGCTGATTTCAGGANTAGTTTTAGGATCAATCTTTTGTAACCTCAAAGATGATATAAGAGGAACACAAGAAAGGATTGGTCTATTTGCTTTCATATTAACTTTTCTGTTATCAAGCAGCATAGAAGCTCTACCAATTTTTCTACAAGAAAGAGAGATTCTAATGAAGGAGACATCTTGTGGAAGCTACCGTGTATCGTCTTATGCTATTGCAAATGGCTTAGTTTACTTGCCATTTCTTCTAATCCTAGCCATTTTGTTCACAGTTCCATTATACTGGCTAGTTGGACTCAACAGAAACTTCACTGCTTTTTTGCACTTTCTGTTACTGATATGGCTTGTTCTTTACACAGCCAATTCAGTTGTGGTGTGTTTCAGTGCTCTTGCGCCTAATTTCATTGTTGGGAATTCAATGATTAATGGTGTTATAGGTTCTTTCTTCTTATTCTCTGGTTACTTCATATCAAACCATGAGATTCCTAGTTACTGGATTTTCATGCATTATATATCACTTTTTAAGTATCCCTTTGAAGGGTTTCTGATCAATGAGTTCTCCAACTCAAAAAAGTGTTTGGAGTACATGTTTGGTGCATGTGTGATGAAGGGAGAGGATGTGCTTAAAGAAGCAGGGTTTGGAGGAGAAAGAAGTAGATGGAAGAATGTTGGTGTCACTGTTTGCTTCATC 1893 0.3772 MKMQGCEVEAIGINYKIHTNKTEHPFKIFSKSPQLDNANGQEIEEEEEARVEKSCSGVRHVLKNVSFQARPWEILAIVGPSGAGKSSLLEILAGKHSPQKGSVLLNQKPVDKSQFRKLSGYVTQKDTLFPLLTVEETMMFSAKLRLKLPQQQLCSRVKSLIQELGLDHVAGTRIGDDRVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTIILSIHQPGFRIVKLFNSLLLLANGSVLHHGTAELLSLNLRLMGLELPLHVNLVEFAIDSIDIIQQQQQQQCQVETEPPRRLLGTMQQKKGGDDEQQQQQSGESKSGKFTLQQLFQQSKVIDEDIINSTGMDFSYDFANSRSSETMILTHRFSKNIFRTKELFACRTIQMLISGXVLGSIFCNLKDDIRGTQERIGLFAFILTFLLSSSIEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFTVPLYWLVGLNRNFTAFLHFLLLIWLVLYTANSVVVCFSALAPNFIVGNSMINGVIGSFFLFSGYFISNHEIPSYWIFMHYISLFKYPFEGFLINEFSNSKKCLEYMFGACVMKGEDVLKEAGFGGERSRWKNVGVTVCFI 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5512g00001 631 Pfam ABC transporter 62 210 IPR003439 GO:0005524
Trme5512g00001 631 ProSitePatterns ABC transporters family signature. 182 196 IPR017871 GO:0005524|GO:0016887
Trme5512g00001 631 Gene3D - 48 353 IPR027417 -
Trme5512g00001 631 MobiDBLite consensus disorder prediction 308 337 - -
Trme5512g00001 631 SMART AAA_5 71 408 IPR003593 GO:0016887
Trme5512g00001 631 FunFam ABC transporter G family member 5 47 307 - -
Trme5512g00001 631 Pfam ABC-2 type transporter 379 587 IPR013525 GO:0016020|GO:0140359
Trme5512g00001 631 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 15 630 - -
Trme5512g00001 631 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 283 IPR003439 GO:0005524
Trme5512g00001 631 CDD ABCG_EPDR 52 265 - -
Trme5512g00001 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 270 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5512g00001 Trme-Chr5512 1 1893 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5512g00001 26 270 Calmodulin-binding Proteins AT2G36910 27.612 4.88e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5512g00001 K05681 - gmx:100789722 1001.5