Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme550g00001 ATGGATTCTCAATCTGAACCCGCCGGAACTTTGCTGCCGGCGATGCCAACTGACGGTTCACAGACGGATTTTTCATGCCTTCCACTGGATCTTGTTCAGGAAATCCTTGCTCGAGTTCCCGTTAAAGATCTCGTCCGATCAAGGTCAGTGTCACAATTATGGAATCGTGTAACCTACCAGAAGAAATTTATATTGAAACATGCTTCGCTTGCAAATCCTCATTTGTTTCTGAGTTTCTCTGAATCGTCTACTGTGTTTAACCTAGTCCATAGGATCGATGGTGAACAAATCTCACTTGAATCGCCATTTGATACTGAGTACAAATTGATACAAGTTATTGGTTCATCTCATGGAATTATGTGTTTGGTGGAATCTGGAAACGTAATACTGTGGAATCCTTCTATTAGGAAGAAATCCATTTTTCTAACTAATCTGTGTAGTTCTGTTGTTAAGGGTCAACATGTTCATGTTGTGTATGGTTTTGGCCATACACATGAATTTGAATTTAAATTCGCGGCGATTGAACAGTTCGAGAATGAGGCAAAATCCATAATGAAAATTGGTACAGCAGGACCTACTTCATGGACCAATATTAACGAGCTTGCACTTGACTTTAATTCATTTGATTTAATTGACTCTGCAAAATTAGTCCAAGAATCTTTGAATTGGTTCTCGGGGAAAGAAATTGTATGTTTGGACTTGAATAAAGAAAAAATTAGGATGCTAAAAACACCAAACTGTGGGGGAACTTGGTCAGGGTCTAAGGACACAATTGGCTGCTGGAAAGACAAGCTTGGGTTCCTCTGTAGAGATACTATGTTATCTGAAGTTTGGATCATGCAAATCTATGGAGATGAAAAGTCTTGGATTAAACTGTTTAGTATTCCACATCTCGATGTTTTTGGTTCGCCATATGTCAACGGCATCCACTACATTTCTGAGAATAATAAAACATTAATGACAGTGATGAAGGATTTCAAGTGGGAGTTGATCGTTTTTGATCCTAACGATAAGAAATTCGAGAACTATGCTGGGAACAAGGATATGCTTGGGAAGTGTGAGCAGGTTCCAAGAGTAGAATCCAAGTTAAGGGTGTTTGCTTTTAAAATCACCTTTTCTGCTCAGGTGAGCGATTTAAGGATAAATCTGAATACAATCAACGATGCAACCAGAGAGACTATTGTTACATTGGGCAATGCTTTGAATCAGGTCAAAGCATTCCCACTACCAATTGAGCTGTATATCCCGAAG 1251 0.3909 MDSQSEPAGTLLPAMPTDGSQTDFSCLPLDLVQEILARVPVKDLVRSRSVSQLWNRVTYQKKFILKHASLANPHLFLSFSESSTVFNLVHRIDGEQISLESPFDTEYKLIQVIGSSHGIMCLVESGNVILWNPSIRKKSIFLTNLCSSVVKGQHVHVVYGFGHTHEFEFKFAAIEQFENEAKSIMKIGTAGPTSWTNINELALDFNSFDLIDSAKLVQESLNWFSGKEIVCLDLNKEKIRMLKTPNCGGTWSGSKDTIGCWKDKLGFLCRDTMLSEVWIMQIYGDEKSWIKLFSIPHLDVFGSPYVNGIHYISENNKTLMTVMKDFKWELIVFDPNDKKFENYAGNKDMLGKCEQVPRVESKLRVFAFKITFSAQVSDLRINLNTINDATRETIVTLGNALNQVKAFPLPIELYIPK 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme550g00001 417 SUPERFAMILY Formin homology 2 domain (FH2 domain) 338 409 - -
Trme550g00001 417 Pfam F-box domain 24 58 IPR001810 GO:0005515
Trme550g00001 417 SMART fbox_2 27 67 IPR001810 GO:0005515
Trme550g00001 417 NCBIfam F-box protein interaction domain 116 333 IPR017451 -
Trme550g00001 417 ProSiteProfiles F-box domain profile. 21 67 IPR001810 GO:0005515
Trme550g00001 417 PANTHER OS09G0372900 PROTEIN-RELATED 27 315 - -
Trme550g00001 417 SUPERFAMILY F-box domain 21 80 IPR036047 GO:0005515
Trme550g00001 417 Gene3D - 23 63 - -
Trme550g00001 417 Gene3D Formin, FH2 domain 330 407 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme550g00001 Trme-Chr550 191 2836 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme550g00001 330 406 FH2 protein (formin) Gene Family AT1G31810 52.525 1.44e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme550g00001 - - vvo:131595490 165.622