Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme55081g00001 | GTTCTTAGAGATGGAAAATGGAGTGAGCAAGAGGCTGCAATTCTAGTCCCAGGAGACATCGTTAGCATCAAACTCGGTGATATTATACCAGCCGATGCTCGTCTTCTAGAAGGCGATCCTTTAATGGTTGACCAAGCAGCATTAACAGGAGAATCACTTCCTGTAACTAGACATCCAGGACAAGAAGTTTTCTCAGGCTCAACTTGCAAACAAGGAGAAATTGAAGCCGTTGTTATAGCAACCGGTGTCCACACATTCTTCGGAAAAGCAGCACATTTAGTTGACAGTACAAACAATGTTGGACATTTCCAAATGGTTCTCAAAGCAATNGGAAACTTTTGTATCTGTTCCATTGCTGTTGGTATGTTGGCTGAGATTATTGTCATGTATCCGATCCAACATCGCAAATATCGCGATGGAATTGACAACCTTTTAGTCCTTTTGATCGGTGGAATTCCAATTGCTATGCCAACTGTTTTGTCCGTTACAATGGCTATCGGTTCTCACAAACTTTCTCAGCAAGGTGCTATCACAAAAAGAATGACTGCTATCGAAGAAATGGCTGGTATGGATGTTCTTTGCAGCGACAAAACCGGAACACTTACTCTTAACAAA | 615 | 0.4179 | VLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLMVDQAALTGESLPVTRHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQMVLKAXGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNK | 205 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme55081g00001 | 205 | Gene3D | - | 82 | 190 | - | - | |
| Trme55081g00001 | 205 | FunFam | Plasma membrane ATPase | 1 | 81 | - | - | |
| Trme55081g00001 | 205 | Gene3D | - | 191 | 205 | IPR023214 | - | |
| Trme55081g00001 | 205 | FunFam | Phospholipid-transporting ATPase IC | 191 | 203 | - | - | |
| Trme55081g00001 | 205 | SUPERFAMILY | Calcium ATPase, transduction domain A | 1 | 94 | IPR008250 | - | |
| Trme55081g00001 | 205 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 94 | 189 | IPR023298 | - | |
| Trme55081g00001 | 205 | Pfam | E1-E2 ATPase | 1 | 173 | - | - | |
| Trme55081g00001 | 205 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 196 | 202 | IPR018303 | - | |
| Trme55081g00001 | 205 | Gene3D | - | 1 | 81 | - | - | |
| Trme55081g00001 | 205 | PRINTS | P-type cation-transporting ATPase superfamily signature | 194 | 205 | - | - | |
| Trme55081g00001 | 205 | PRINTS | P-type cation-transporting ATPase superfamily signature | 44 | 58 | - | - | |
| Trme55081g00001 | 205 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 1 | 205 | - | - | |
| Trme55081g00001 | 205 | NCBIfam | HAD-IC family P-type ATPase | 4 | 205 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme55081g00001 | Trme-Chr55081 | 1 | 615 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme55081g00001 | 1 | 205 | Primary Pumps ATPases | AT2G18960 | 93.171 | 7.21e-135 | 397 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme55081g00001 | K01535 | - | gmx:100804422 | 394.43 |