Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme550236g00001 GGTAGACCACCTACTGATCAGCAGCAGCAGGTGGTGATGAAGAAAAGGTTCAGAACAAAGTTCACACAGGAGCAGAAAGACAAAATGTTCAACTTTGCTGAGAAAGTTGGGTGGAAATTTCAGAAGCAAGAGGAATCTCTAGTGCAACAGTTCTGCCAAGAGATTGGAGTCAAAAGAAGAGTGCTCAAGGTTTGGATGCATAACAATAAACACAATCTCGCCAAAAAACAGTTACAAGATGAACATACTACTGCTAATCATCTCCCAACTCC 272 0.4191 GRPPTDQQQQVVMKKRFRTKFTQEQKDKMFNFAEKVGWKFQKQEESLVQQFCQEIGVKRRVLKVWMHNNKHNLAKKQLQDEHTTANHLPTP 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme550236g00001 91 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 10 73 - -
Trme550236g00001 91 NCBIfam homeobox domain, ZF-HD class 14 70 IPR006455 -
Trme550236g00001 91 FunFam Zinc-finger homeodomain protein 2 3 75 - -
Trme550236g00001 91 Gene3D - 3 76 - -
Trme550236g00001 91 SUPERFAMILY Homeodomain-like 8 75 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme550236g00001 Trme-Chr550236 1 272 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme550236g00001 14 77 ZF-HD Transcription Factor Family AT2G02540 79.688 3.82e-33 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme550236g00001 - - tpra:123910799 180.644