Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54g00001 ATGAGTGTAAAATCTGCTGCACAAGATGTGATTCAACTATTGAAACAATCAAAGTGTCCTCTCCTACTAGGAATATGGGGGATGAAAGGGGTTGGAGTTTGGAAAAGAACTAGTGGTCAAGTTTCTTTGCAAGAAAATATACTTTTTGATATCGACAAAGTATTTGAAATAACGATACCTACAATTGAGTCAGGAAAAGTGATTTCAAAAGAAAGCCTTCGACATAAAAGGGTACTTCTTATACTTGACGATGTTGATAAATTGGAGCAGCTAAAGGCTTTGTGTGGAAATCGGGATTGGTTTGGTCCAGGTAGTAAAATAATCACCACCACAAGAGATAGACATCTACTCAAGGAGCTTGGAGTTGACCATATATATAGGGTGAAAGAACTGGATGAAAGTGAATCGCTTGAGGTTTTTAATTGGTATACATTCGGCCAAGCAACTTCTCGAGAAGATTTTAGTATCCTTTCCAGACAGGTAGTTGCTTATTCTAGGGGACTGCCTCTTGCTCTTGGAGAACTTGGGTGGTTTTTGTATGGGAAGGCAATACGTGAGTGGAAGAAAGTGTTGAGGACTTTCGAAAGATTTTCCATTCCATCTCCAATACTACTAGAAGCTCTAGAAAAGAGTTTAAGTGATTTGAGTGATGAGGAGAAACGGATATTCTTTGATATAGCATGTTTCTTTATTGGGCTGAACCAAAATGATGTAATTCAAACATTAAATACTTCAACACAATCTGCAACCCTTCAAATAAGTCTCCTTGAAGACAAGAGCTTTGTTACCATTGATGAGAATAACAACCTTCAAATGCATGTTCTGCTACAAGCCATGGCAAAAGATATCATAAAGAGAGACTCAAGTAGTAAGACTGATCAGCTAAAGATGTACGATGTCTTCTTGAGTTTCAGAGGGGAAGACAGTCGTGCAAAGTTCATGTCACATCTCTCTATTCCGCTCTTCAAAATGCAGGGATTTATGCTTTCAAAGACGATGACGAGATTCAATGAGGAGATCAGATCTCAATCTCATTATTGCGAGCAATCGGACGAGTTGGAGAAGATCATGGAAATTGGTAGAACCAGGGGTCTAGTGGTTGTGCCAGTGTTCTATGAGGTAGATCCCTCAGAAGTACGTCATCAGGAAGGTCAGTTTGGAAAATCTTTTGAAGATCTTATATCAACAGTGTCAGTGGATGAATCCACACAGGTTAATTGGAGAAGAGAACTCTTGGATATTGGTGGCATAGCAGGGTTTGTCCTCATAGATTCCAGGAATGAAAGTGCTGATATCAAGAATATTGTTGAACATGTCACCCGTTTGCTAGATAGGACAGAGTTGTTCGTTGCTGAACATCCAGTGGGAGTAGAATCTCGTGTGCAAGCTGCAACTAAGCTATTAAACATCCAAAAATCAGAAGATGTTTTACTTCTAGGCATATGGGGAATGGGGGGTACGGGTAAAACAACCATTGCCAAAGCCATTTACAACAAAGTTGGGAGAAAATTTGAGGGACGTAGCTTTCTTCTGAATATAAGGGAATTTTGGGAGACAGATACTAATCAAGTTTCTCTACAGCAACAGATACTCTGTGATGTTTACAAAACAACCACATTCAAGATACGTGACATTGAATCAGGGAAAAATATACTGAAGGAAAAACTTGCCCAGAATAAGGTACTTCTTGTGCTTGATGATGTGAATGAATTGGAACAACTACAGACTTTTTGTGGAAGCCGCAAATGGTTTGGTCCCGGGAGTAGAATAATCATCACAACAAGAGATATCCATCTTCTTAGATCGTGTAGAGTTGATCAATTGTATACAGTAAAAGAAATGGACGAAAGAGAATCTCTTGAGCTTTTCAGCTGGCATGCATTCAAGCAACCAAGTCCAACAGATGATTTTGCTACACATTCAACAGATATGATTGCTTATTCTGGTAAATTGCCACTAGCACTTCAAGTCCTTGGGTCTTATTTGTTTGACTGTGAAATAACAGTGTGGCAGAAAGTTTTAGAGAAACTTAAATGTGTTCCCAATGACCAAGTACAAAAGAAGCTAAAAGTAAGTTTCGATGGTTTAAAAGATGTTACGGAGAAACAAATATTCCTTGATATAGCCTGCTTCTTTATTGGGATGGACCAAAATGATGTAATACAAATATTAAATGGGTGTGGGTTTTTTGCTGATATTGGAATCAAAGTCCTTTTTGAGCGAGCCCTTTTAACTGTTGACAATAGGAACAAGCTTAGAATGCATGATATGTTAAGAGGCATGGGAAGACAAATAGTTTATGAGGAATCACCATTGGATCCTGAGAAGCGCAGTAGGTTGTGGCGCCGTGAAGATGTGTTTGATATATTATCAAAGCATAAGGGAACTGAAGCTGTCAAGGGACTGACTTTGGTGATTCCTATAAAAAATACAGTTTGTCTGAATACCAAAGCATTTAAGAGGATGAATAAACTTAGGTTGCTTCAGCTTGCTGGGAATTTCTGCAAGGAAGTCTAG 2517 0.3874 MSVKSAAQDVIQLLKQSKCPLLLGIWGMKGVGVWKRTSGQVSLQENILFDIDKVFEITIPTIESGKVISKESLRHKRVLLILDDVDKLEQLKALCGNRDWFGPGSKIITTTRDRHLLKELGVDHIYRVKELDESESLEVFNWYTFGQATSREDFSILSRQVVAYSRGLPLALGELGWFLYGKAIREWKKVLRTFERFSIPSPILLEALEKSLSDLSDEEKRIFFDIACFFIGLNQNDVIQTLNTSTQSATLQISLLEDKSFVTIDENNNLQMHVLLQAMAKDIIKRDSSSKTDQLKMYDVFLSFRGEDSRAKFMSHLSIPLFKMQGFMLSKTMTRFNEEIRSQSHYCEQSDELEKIMEIGRTRGLVVVPVFYEVDPSEVRHQEGQFGKSFEDLISTVSVDESTQVNWRRELLDIGGIAGFVLIDSRNESADIKNIVEHVTRLLDRTELFVAEHPVGVESRVQAATKLLNIQKSEDVLLLGIWGMGGTGKTTIAKAIYNKVGRKFEGRSFLLNIREFWETDTNQVSLQQQILCDVYKTTTFKIRDIESGKNILKEKLAQNKVLLVLDDVNELEQLQTFCGSRKWFGPGSRIIITTRDIHLLRSCRVDQLYTVKEMDERESLELFSWHAFKQPSPTDDFATHSTDMIAYSGKLPLALQVLGSYLFDCEITVWQKVLEKLKCVPNDQVQKKLKVSFDGLKDVTEKQIFLDIACFFIGMDQNDVIQILNGCGFFADIGIKVLFERALLTVDNRNKLRMHDMLRGMGRQIVYEESPLDPEKRSRLWRREDVFDILSKHKGTEAVKGLTLVIPIKNTVCLNTKAFKRMNKLRLLQLAGNFCKEV 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54g00001 838 SMART till_3 297 417 IPR000157 GO:0007165
Trme54g00001 838 Pfam TIR domain 345 444 IPR000157 GO:0007165
Trme54g00001 838 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 226 IPR027417 -
Trme54g00001 838 ProSiteProfiles TIR domain profile. 296 443 IPR000157 GO:0007165
Trme54g00001 838 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 298 829 IPR044974 GO:0006952
Trme54g00001 838 SUPERFAMILY "Winged helix" DNA-binding domain 684 790 IPR036390 -
Trme54g00001 838 Gene3D - 34 124 IPR027417 -
Trme54g00001 838 Gene3D - 440 608 IPR027417 -
Trme54g00001 838 Pfam NB-ARC domain 461 683 IPR002182 GO:0043531
Trme54g00001 838 Pfam NB-ARC domain 71 199 IPR002182 GO:0043531
Trme54g00001 838 SUPERFAMILY Toll/Interleukin receptor TIR domain 296 410 IPR035897 -
Trme54g00001 838 Gene3D - 338 439 IPR035897 -
Trme54g00001 838 Gene3D - 130 208 IPR042197 -
Trme54g00001 838 Gene3D - 613 697 IPR042197 -
Trme54g00001 838 PRINTS Disease resistance protein signature 478 493 - -
Trme54g00001 838 PRINTS Disease resistance protein signature 648 662 - -
Trme54g00001 838 PRINTS Disease resistance protein signature 555 569 - -
Trme54g00001 838 Gene3D - 260 327 IPR035897 -
Trme54g00001 838 SUPERFAMILY "Winged helix" DNA-binding domain 208 288 IPR036390 -
Trme54g00001 838 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 441 708 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54g00001 Trme-Chr54 1116 5515 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54g00001 251 838 WRKY Transcription Factor Family AT4G12020 29.527 3.47e-60 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54g00001 - - mtr:11411578 1228.77