Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5499g00001 GCTCTCGTGCATCCGCAGCAGCTTCCTGTGAACAATCACCAGAATACACAAAAATCACCGACAAATACTAGAGCTCCTTCCGCTTTTACAGATGGAGATGCCCCGTCATGCTCAACTTCGCCATCTACTAATAACTGTCAGACATCGCCTCCAAACCTCCTGAAAAGAAATCAACCAGATGCATTTGGAGGGCCTTTGATAGTTGAAACCACCAATAATATGATGCAGGAGCTTCAAAGTAAGTCTGACTTGCCGAACAAGCACGAATTACAAGGTGTAAAAGGACCCGACAAGCAAAAGTACAAAGGGGCGATCAATGATCAGATGGAAGCTTCTTCCGGAACATCTTACGGTATTGATCCTGCTAACATCCACCAGAACTTCCCACTTTCCAACTTCTACATGGATAGNNNNNNNNNNANNNNNNNNNCAAGAAGTAACTTACCATTTGCCTCTAACCTTGATGGATTAACACCTGATCCTTTGCTCTCAAGAGGGTATGATTCTCAAAAAGATCTTCAAAACTTGTTGTCTAATTATGGTGGTGCTCCAAGAGATATTGAAACTGAGCTGTCCACTGCTGATATTAGTTCACAGTCGTTTGGAGTGCCGAACATGTCTTTTAAGCCAGGATGCTCTAGTGATATTGCTATCCCTGATACTGGTGTTATGAATAATAATGGCTTGTGGTCTAATCAGACTCAACGAATGCGAACATATACTAAGGTTCAAAAATGTGGCTCAGTCGGAAGATGTATTGATGTCACCCGTTACAAGGGATATGAAGAACTCCGGAATGATTTGGCTCGTATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCTAAGGACTGACTGGAAACTAGTATATGTGGATCACGAAAATGACATTCTTCTCGTCGGCGATGACCCTTGGGAAGAATTTGTAAACTGTGTTCAAAGCATAAAGATACTATCATCTGCCGAAGTACAACAAATGAGCCTAGAAGGGGACTTAGGTTATGTTCCAATCACCAATCAAGCTTGTAGTGGTTCAGAAAGTGGTAATGCATGGAGGGCACAGTATGATGATAACTCTGCAGCCTCGTTTAATCGATAA 1098 0.4189 ALVHPQQLPVNNHQNTQKSPTNTRAPSAFTDGDAPSCSTSPSTNNCQTSPPNLLKRNQPDAFGGPLIVETTNNMMQELQSKSDLPNKHELQGVKGPDKQKYKGAINDQMEASSGTSYGIDPANIHQNFPLSNFYMDXXXXXXXXRSNLPFASNLDGLTPDPLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNMSFKPGCSSDIAIPDTGVMNNNGLWSNQTQRMRTYTKVQKCGSVGRCIDVTRYKGYEELRNDLARMFGIEGQLEDPLRTDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSAEVQQMSLEGDLGYVPITNQACSGSESGNAWRAQYDDNSAASFNR 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5499g00001 365 Gene3D - 233 327 - -
Trme5499g00001 365 Pfam AUX/IAA family 235 324 IPR033389 -
Trme5499g00001 365 MobiDBLite consensus disorder prediction 7 55 - -
Trme5499g00001 365 SUPERFAMILY CAD & PB1 domains 251 316 - -
Trme5499g00001 365 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 327 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme5499g00001 365 MobiDBLite consensus disorder prediction 1 66 - -
Trme5499g00001 365 ProSiteProfiles PB1 domain profile. 238 322 IPR000270 GO:0005515
Trme5499g00001 365 FunFam Auxin response factor 233 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5499g00001 Trme-Chr5499 1 1381 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5499g00001 2 365 B3 DNA Binding Superfamily AT1G19220 56.397 2.35e-131 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trme5499g00001 AUX_IAA 7.8e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5499g00001 K14486 - gmx:100804628 571.622