Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54998g00001 CTTCCTGGTGATTTTGGTTTTGACCCTCTTGGATTAGAGTTATTAAAATGGTTTGCACAAGCCGAACTAATGCATTCAAGATGGGCAATGTTAGGAGTATCAGGAATCCTCATCCCAGAAATACTCGACAATATGGGTTACGTAAAAAACTTCTCATGGTACAATGCAGGATCAGTCCAATATTTTACAGACCCAACAACACTATTCATTGTTCAACTCGCTTTAATGGGTTGGGTCGAGGGTCGAAGATGGGCCGATATTGTTAATCCAGGTAGCGTTGATATTGAGCCCAAGTTACCAAATCGGCCCAACCCAAAACCAGATGTTGGTTATCCTGGCGGGCTTTGGTTTGACCCTATGCAGTGGGGAAGAGGTTCACCTGAGCCTGTTATGGTTTTGAGGACTAAGGAGATTAAGAATGGAAGACTTGCTATGCTTGCTTTTCTTGGATTTTGTTTTCAAGCTGTTTATACTGGTGGTAGTCCTCTTGATAATTTGATGGCTCATCTTGCTGATCC 518 0.4266 LPGDFGFDPLGLELLKWFAQAELMHSRWAMLGVSGILIPEILDNMGYVKNFSWYNAGSVQYFTDPTTLFIVQLALMGWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQAVYTGGSPLDNLMAHLADP 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54998g00001 173 Gene3D Chlorophyll a/b binding protein domain 1 173 - -
Trme54998g00001 173 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 173 IPR001344 GO:0009765|GO:0016020
Trme54998g00001 173 Pfam Chlorophyll A-B binding protein 1 155 IPR022796 -
Trme54998g00001 173 SUPERFAMILY Chlorophyll a-b binding protein 1 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54998g00001 Trme-Chr54998 161 918 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54998g00001 1 173 Chloroplast and Mitochondria Gene Families AT3G61470 63.842 3.39e-78 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54998g00001 K08908 - cpap:110817682 316.235