Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54985g00001 ATGACTTCGGCCAAGAATAGGCTCGGAGAGGTTGCAGTGTTGATATTTTGTGAACTTGAAAACTCGATCAAATCTGACTGCGGAAAAACACCAGTCGCCGGTGGCGCAGTTCATCCGTTAACTCGCTACATAGTGAACTATCTGAGACTTGCATGCGAGTATAAAGACACATTGGAAGAGGTTTTTCGAGAGCACTCGAAAATTGAGCGTNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNACTAAAGAGAAAGAAAACACATCACCATTTGCGGCACAATTAACACGTCTAATGGAATTACTCGACGCAAATCTCGAAGGAAAAGCGAAACTCTACAAAGAAGTACCATTAAGTTGCATCTTTATGATGAACAATGGAAGGTACATTGTTCAAAAAATCAAAGGCTCGGCTGAAATCTACGAAGTGATGGGCGAAACTTGGTGTCGTAAGAGATCAACTGAGTTGAGAACTTACCATAAAAACTATCAAGTAGAAACCTGGAGTAAGATATTGACTTGTTTAAGTCCAAAAGGGAGACAAACTGAGAAGTATATTAAGTTTCAAGCTGAGGATATAGAGAATTATATTGATGACTTGTTTGCTGGGAATCCTCATCAAGCCATG 639 0.3725 MTSAKNRLGEVAVLIFCELENSIKSDCGKTPVAGGAVHPLTRYIVNYLRLACEYKDTLEEVFREHSKIERXXXXXXXXXXXXXXXTKEKENTSPFAAQLTRLMELLDANLEGKAKLYKEVPLSCIFMMNNGRYIVQKIKGSAEIYEVMGETWCRKRSTELRTYHKNYQVETWSKILTCLSPKGRQTEKYIKFQAEDIENYIDDLFAGNPHQAM 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54985g00001 213 Coils Coil 86 90 - -
Trme54985g00001 213 Pfam Exo70 exocyst complex subunit 4 183 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trme54985g00001 213 Gene3D Exocyst complex component Exo70 183 212 - -
Trme54985g00001 213 Gene3D Exocyst complex component Exo70 1 182 - -
Trme54985g00001 213 SUPERFAMILY Cullin repeat-like 3 205 IPR016159 -
Trme54985g00001 213 Coils Coil 58 70 - -
Trme54985g00001 213 PANTHER EXOCYST COMPLEX PROTEIN EXO70 3 186 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54985g00001 Trme-Chr54985 40 888 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54985g00001 179 208 EXO70 exocyst subunit family AT5G13990 70.000 2.14e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54985g00001 K07195 - gmx:100819960 297.745