Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54947g00001 ATGAACACGAGGCAGCAAGTGGGAGAACAGAACAACAATCACTCATCAGCAGGAACAGAACAAGACAATGAATGCACTGTAAGGGAACAAGACCGTTTCATGCCAATTGCAAATGTGATAAGGATCATGCGAAAGATTCTACCACCGCATGCAAAAATATCTGACGATGCAAAAGAAACAATTCAAGAGTGTGTATCTGAGTACATCAGCTTCATAACTGGAGAAGCAAATGAACGTTGTCATNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNATGTATCTTCATCGTTATCGTGAGCTTGAGGGTGATCGTACTTCAATGAGAGTTGAACCTTTGGGAAAGAGGGGTATGGATCAATATGGAAATGCTTTAGGGGGGTTTGTTCCACAGTTTCATATTGGTCATCCAAATGGAGGGTATTATGGTAATGCACCAACTTATATGATGAGGGATGGTAATAACAATAATGCTGCTGGAG 535 0.3439 MNTRQQVGEQNNNHSSAGTEQDNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMYLHRYRELEGDRTSMRVEPLGKRGMDQYGNALGGFVPQFHIGHPNGGYYGNAPTYMMRDGNNNNAAG 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54947g00001 178 MobiDBLite consensus disorder prediction 1 26 - -
Trme54947g00001 178 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trme54947g00001 178 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 82 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trme54947g00001 178 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 81 IPR003958 -
Trme54947g00001 178 SUPERFAMILY Histone-fold 5 81 IPR009072 GO:0046982
Trme54947g00001 178 Gene3D Histone, subunit A 6 85 IPR009072 GO:0046982
Trme54947g00001 178 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54947g00001 Trme-Chr54947 351 885 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54947g00001 10 168 CCAAT-HAP3 Transcription Factor Family AT5G47670 49.425 1.70e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trme54947g00001 CBFD_NFYB_HMF 1.6e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54947g00001 K08065 - qsu:111986522 181.03