Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54938g00001 ATGTCCAATAACACACTGCTAGCCTATTTGCACGAAGGCTTAGAACCCAAAGTTGTCCACCGAGATGTAAAATCCAGCAATATTCTCTTGGACAAAAAATGGAATGCCAAAGTATCGGACTTTGGACTTGCTAAGCTCTTAGGGTCTGGGAAAAGCTATGTGACAACACGTGTCATGGGGACATTTGGATATGTTTCACCCGAGTATGCAAGCACGGGTATGCTTAATGAGGGTAGTGATGTGTATAGTTTTGGGATTCTACTCATGGAGCTAGTTACAGGAAGAAGTCCCATTGATTATTCTAGAGCACCTGCAGAGATGAACTTGGTTGATTGGTTTAAGGGAATGGTAGCAAGTCGTCGCGGTGATGAGCTAGTTGATCCTTTGATCGAGATTCAGCCCTCTCCAAGATCTTTGAAACGAGCTTTACTGGTCTGTCTTCGCTGTATAGATTTGGATGCCAACAAGCGACCAAAGATGGGTCAAATTGTTCATATGCTTGAGGCAGATGATTTTCCCTTTCGTTCT 528 0.4356 MSNNTLLAYLHEGLEPKVVHRDVKSSNILLDKKWNAKVSDFGLAKLLGSGKSYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGILLMELVTGRSPIDYSRAPAEMNLVDWFKGMVASRRGDELVDPLIEIQPSPRSLKRALLVCLRCIDLDANKRPKMGQIVHMLEADDFPFRS 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54938g00001 176 SMART serkin_6 1 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme54938g00001 176 PANTHER OS01G0323000 PROTEIN 6 174 - -
Trme54938g00001 176 ProSiteProfiles Protein kinase domain profile. 1 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme54938g00001 176 FunFam Putative receptor-like serine/threonine-protein kinase 1 176 - -
Trme54938g00001 176 SUPERFAMILY Protein kinase-like (PK-like) 7 168 IPR011009 -
Trme54938g00001 176 Gene3D Transferase(Phosphotransferase) domain 1 5 172 - -
Trme54938g00001 176 ProSitePatterns Serine/Threonine protein kinases active-site signature. 18 30 IPR008271 GO:0004672|GO:0006468
Trme54938g00001 176 Pfam Protein kinase domain 7 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54938g00001 Trme-Chr54938 40 853 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54938g00001 7 167 Receptor kinase-like Gene Family AT3G58690 50.000 8.70e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trme54938g00001 Pkinase 1.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54938g00001 - - gmx:100305439 329.331