Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5488g00001 ATGAGAATCTCAGTTTTATTGGTTGAATTTCAGGTAGAGGTTTTAAGTAGAGTAAGACATCCAAATCTGTTAACACTAATTGGAAGCTGTGCAGAGTCTAAGTCACTTGTGTATGAATACCTAAACAATGGTAGCCTCGCAAGCCATCTTGCCTGCAAAGACAAGACTCCACTTCCATGGCAAATTCGAATAGCTATTGCTACCGACATATGCTCTGCTCTTATCTTCCTTCACTCCAGTGAGCCTTGTATTATCCATGGGAATTTGAAGCCTAGTAAGGTTCTCCTTGATGCTAACTTTGTTGCCAAACTTGGTGACTTAGGGATTCCTTCTTTAGTCCAGCATAGTGTGGATTCAGCTGACACAAGCCCAGTAGTATGTAACAACTCTCATGAAAATTTGGCATATGTGGATCCAGAGTATCTTGACACTGGTAAACTTACACCAGAATCAGATGTGTATTCATTTGGAATCATACTGTTACAACTTTTAACTGGAAGACCACTTGCGGGGCTAGTTAGAGATATGAGATGTGCATTGGAAAAAGAAAATCTTAAAACTGTGTTGGACTTGTCAGCTGGTGAATGGCCACTTTATCAAACCACACAACTGGCATATTTAGCATTGAGGTGTTGTGAGAAGACTTGGTTGAACCGGCCAGATCTTGTGTCAGAAGTCTGGAGTGTTCTTAAACCATTCAGAACTATTTGCATAGACAGGAGACAAGAGTTGACTTCTAAGAAGCTTCAACGAGCTCCTTCTCATTTTGTCTGTCCCATTGTCCAGGAAGTTATGGAAGATCCATACATAGCTGCAGATGGCTTTACATATGAAGAAGAGGCAATAAGAGGATGGTTGGACAGTGGTCACGACACTTCCCCTATGACAAACCTCACACTTGAACACACAGATTTGGTACCTAATTATGCACTACATAATGCCATTCAGGAGTGGCAGCAACAGTGA 966 0.4141 MRISVLLVEFQVEVLSRVRHPNLLTLIGSCAESKSLVYEYLNNGSLASHLACKDKTPLPWQIRIAIATDICSALIFLHSSEPCIIHGNLKPSKVLLDANFVAKLGDLGIPSLVQHSVDSADTSPVVCNNSHENLAYVDPEYLDTGKLTPESDVYSFGIILLQLLTGRPLAGLVRDMRCALEKENLKTVLDLSAGEWPLYQTTQLAYLALRCCEKTWLNRPDLVSEVWSVLKPFRTICIDRRQELTSKKLQRAPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLDSGHDTSPMTNLTLEHTDLVPNYALHNAIQEWQQQ 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5488g00001 321 SUPERFAMILY Protein kinase-like (PK-like) 9 226 IPR011009 -
Trme5488g00001 321 Pfam Protein tyrosine and serine/threonine kinase 11 222 IPR001245 GO:0004672|GO:0006468
Trme5488g00001 321 SMART Ubox_2 255 318 IPR003613 GO:0004842|GO:0016567
Trme5488g00001 321 SUPERFAMILY RING/U-box 249 321 - -
Trme5488g00001 321 CDD RING-Ubox_WDSUB1-like 253 308 - -
Trme5488g00001 321 ProSiteProfiles Protein kinase domain profile. 1 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme5488g00001 321 ProSiteProfiles U-box domain profile. 251 321 IPR003613 GO:0004842|GO:0016567
Trme5488g00001 321 PANTHER OS02G0152300 PROTEIN 11 317 - -
Trme5488g00001 321 Pfam U-box domain 252 320 IPR003613 GO:0004842|GO:0016567
Trme5488g00001 321 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Trme5488g00001 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 321 IPR013083 -
Trme5488g00001 321 Gene3D Transferase(Phosphotransferase) domain 1 3 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5488g00001 Trme-Chr5488 518 1886 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5488g00001 9 321 U-box Gene Family AT3G49060 53.538 1.14e-112 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trme5488g00001 PK_Tyr_Ser-Thr 6.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5488g00001 - - gmx:100799675 553.518