Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54888g00001 ATGAACAGAGTCTCAGAACAGGGAGAGGATGACTTCTGCCGAGAAATTGAGCTTCTTGCTCGGCTTCACCATCGGCATCTTGTTGCGTTAAGAGGCTTTTGTATCAATAAACAAGAAAGGTTTCTGTTGTACGAGTACATGGGAAATGGAAGCTTAAAAGATCATCTTCATTCCCCTGGTAAAACACCATTAAGTTGGCGAACTAGAATCCAAATTGTTATTGATGTGGCCAACGCCCTGGAATACCTTCATTTCTATTGTGATCCTCCTCTTTGTCACAGAGATATCAAGGCTAGCAACACTTTACTGGACGAGAACTTTGTTGCTAAG 330 0.4212 MNRVSEQGEDDFCREIELLARLHHRHLVALRGFCINKQERFLLYEYMGNGSLKDHLHSPGKTPLSWRTRIQIVIDVANALEYLHFYCDPPLCHRDIKASNTLLDENFVAK 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54888g00001 110 ProSitePatterns Serine/Threonine protein kinases active-site signature. 91 103 IPR008271 GO:0004672|GO:0006468
Trme54888g00001 110 ProSiteProfiles Protein kinase domain profile. 1 110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme54888g00001 110 PANTHER OS01G0750732 PROTEIN 5 110 - -
Trme54888g00001 110 Gene3D Phosphorylase Kinase; domain 1 1 47 - -
Trme54888g00001 110 SUPERFAMILY Protein kinase-like (PK-like) 4 110 IPR011009 -
Trme54888g00001 110 Pfam Protein tyrosine and serine/threonine kinase 5 110 IPR001245 GO:0004672|GO:0006468
Trme54888g00001 110 SMART tyrkin_6 1 110 IPR020635 GO:0004713|GO:0006468
Trme54888g00001 110 Gene3D Transferase(Phosphotransferase) domain 1 48 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54888g00001 Trme-Chr54888 114 884 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54888g00001 1 110 Receptor kinase-like Gene Family AT3G19300 80.909 1.17e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Trme54888g00001 PK_Tyr_Ser-Thr 2.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54888g00001 - - gmx:100807955 207.608