Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54872g00001 GTCACTGGAGATGTTTTAAGGATTAGGCAGATTCTGACAAATTTAGTCAGCAATGCTGTCAAGTTTACAGCTCAAGGCAAAGTTGGTATAAACCTTTATGTTGTTCCAGAGCCACCATTTGCCAAAGAAGAAGAATCTAACCAAAAGGTGACAGAAAACCAGTCAACTATTTCAGCAAATGGATTGAAGGAAGAGAAGTATTCATCATCACCGAGAAGTACTAGATGTGATCAAAATCTTATTGATGACAAAAAGCACACTGACCAACCAATTCAAAATCATGCATTTAGCAATGAATGTAGATCTTCAGTTAACAGTGAATGCTCAATGAATGATGATACTGAGGAACAAACTCATTCAACGGAAACAACAGTGTGGATACGTTGTGATGTATACGACACAGGAATTGGCATACCAGAAAAGGCTATACCTACTTTATTTAGAAGGTACATGCAAGTTAGTGCAGATCATGCTCGAAAATATGGTGGCACAGGTCTAGGACTAGCAATATGTAAACAACTGGTAAACTCGTATGCTCGAAAGCTCATATGCACTGATCGTGTAAAGAGTTTTTACATTGTCAGTCAATCATAA 594 0.3771 VTGDVLRIRQILTNLVSNAVKFTAQGKVGINLYVVPEPPFAKEEESNQKVTENQSTISANGLKEEKYSSSPRSTRCDQNLIDDKKHTDQPIQNHAFSNECRSSVNSECSMNDDTEEQTHSTETTVWIRCDVYDTGIGIPEKAIPTLFRRYMQVSADHARKYGGTGLGLAICKQLVNSYARKLICTDRVKSFYIVSQS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54872g00001 197 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 2 176 - -
Trme54872g00001 197 ProSiteProfiles Histidine kinase domain profile. 1 197 IPR005467 -
Trme54872g00001 197 SMART HKATPase_4 3 197 IPR003594 -
Trme54872g00001 197 PRINTS Bacterial sensor protein C-terminal signature 127 141 IPR004358 GO:0016310|GO:0016772
Trme54872g00001 197 PRINTS Bacterial sensor protein C-terminal signature 162 180 IPR004358 GO:0016310|GO:0016772
Trme54872g00001 197 PRINTS Bacterial sensor protein C-terminal signature 145 155 IPR004358 GO:0016310|GO:0016772
Trme54872g00001 197 MobiDBLite consensus disorder prediction 42 75 - -
Trme54872g00001 197 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 3 181 IPR003594 -
Trme54872g00001 197 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2 187 IPR036890 -
Trme54872g00001 197 Gene3D - 1 194 IPR036890 -
Trme54872g00001 197 MobiDBLite consensus disorder prediction 50 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54872g00001 Trme-Chr54872 76 878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54872g00001 1 64 Histidine Kinase Gene Family AT5G10720 54.688 1.17e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54872g00001 - - cam:101512841 317.39