Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54795g00001 CACTTATTCAACAAAGTCGCTTCTTCTCAAAACAAAACCGCTCTTATAGATGCTGATTCTTACCAAACCCTAAATTTCGCTCAATTAAAATCACTAACAATTAAACTCGCACATGCTTTAATCCACATCGGTTTAAAAAAAACCGACGTCGTTTTATTCCTCGCTCCAAATAGTTACCTCTACCCTGTTTTCTTCCTCGCCGTCGCTTCCATCGGCGCCATCGCATCCACCGTCAATCCTACCTACACCACCACCGAAGTCTCTAAACAAGCAAAAGATTCAAATCCGAAGCTCATCATCACCGTCGCTGAATTATGGGAGAAAGTAAAACACCTCAATGTCCCCGCCGTTTTTCTCAACTCCGGCACCACACCGACGACTACACCGACACCAAATGTTACGAGTTTCGAATCGTTCGTCAAACTCGGCGAATCGGAAACTAAATTTCCGGAAATTGACGTCAAACAGAGCGATACGGCGGCGCTTTTGTATTCCTCCGGTACAACCGGTGTAAGCAAAGGAGTGATTCTCACGCACGGGAATTTCATCGCTTCTGCAGCGATGATTTCGATGGATGATGAATTGAACGGAGATATAAACGATGTGTATCTCGTTTTTCTTCCAATGTTTCATGTGTTTGGACTTGCGGTGATTACATTTTCGCAGCTTGTGAGAGGAAACTGTGTGGTTTCGTTGAAGAGATTTGAATTTGAAGTGGTTTTGAAAACTATTGAGAAATTTAGGGTTACAAGGTTATGGGTTGTGCCTCCTATTATACTTGCTCTTGCTAAACATGGTTTGGTTGATAAGTATGATCTTTCTTCTTTGAAGTATATTGGTTCTGGTGCTGCTCCTCTTGGGAAAGAGTTGATGGAAGAGTGTGCTAAGCGATTCCCTCATGCTGTTGTTTCTCAGGTTC 919 0.4298 HLFNKVASSQNKTALIDADSYQTLNFAQLKSLTIKLAHALIHIGLKKTDVVLFLAPNSYLYPVFFLAVASIGAIASTVNPTYTTTEVSKQAKDSNPKLIITVAELWEKVKHLNVPAVFLNSGTTPTTTPTPNVTSFESFVKLGESETKFPEIDVKQSDTAALLYSSGTTGVSKGVILTHGNFIASAAMISMDDELNGDINDVYLVFLPMFHVFGLAVITFSQLVRGNCVVSLKRFEFEVVLKTIEKFRVTRLWVVPPIILALAKHGLVDKYDLSSLKYIGSGAAPLGKELMEECAKRFPHAVVSQV 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54795g00001 306 ProSitePatterns Putative AMP-binding domain signature. 162 173 IPR020845 -
Trme54795g00001 306 Gene3D - 1 306 IPR042099 -
Trme54795g00001 306 SUPERFAMILY Acetyl-CoA synthetase-like 5 302 - -
Trme54795g00001 306 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 301 - -
Trme54795g00001 306 Pfam AMP-binding enzyme 5 303 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54795g00001 Trme-Chr54795 1 919 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54795g00001 2 305 Monolignol Biosynthesis Gene Families AT4G05160 57.190 2.91e-124 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54795g00001 K01904 - gmx:100797843 416.001