Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54762g00001 TTTGCTGCAAACGAGTGGTTGATTCAACGGTTGGAAACAGTCAGTGCAGTTGTTCTTGCATCAGCTGCACTTTCCATGGTTGTACTTCCACCCAGAACATTCTCCTCTGGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCACTTAACGCTTCCTTAGTATTTTCAATTCAAAATCAATGCAATATAGATAATTACATAATATCAGTGGAGAGACTAAACCAATATACGGATGTACCAAGTGAGGCTCCAGAAGTAATAGAAGGAAATCGTCCTCCGCCGAATTGGCCAGTTGTTGGTAGAGTAGAAATAAAGGAACTTCAGATACGGTACAGGCCTGATGCGCCACTAGTACTCCACGGAATCACATGTACATTTGAAGGAGGACACAAAATTGGTATAGTTGGTCGCACTGGGAGTGGCAAAACCACTCTTATTGGCGCTTTATTTCGTTTAGTGGAGCCAACAGGTGGAAAAATCATTGTTGATGGCATTGACATTGGTTCCATTGGACTTCATGATTTGAGGTCACGTTTTGGTATTATTCCTCAGGACCCTACTCTTTTTAATGGAACAGTCAGATACAATTTGGATCCTTTATCTCAACACTCTGATCAAGAGATATGGGAGGTAATACTAATACC 644 0.4146 FAANEWLIQRLETVSAVVLASAALSMVVLPPRTFSSGFIGMALSYGLSLNASLVFSIQNQCNIDNYIISVERLNQYTDVPSEAPEVIEGNRPPPNWPVVGRVEIKELQIRYRPDAPLVLHGITCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPTGGKIIVDGIDIGSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHSDQEIWEVILIP 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54762g00001 215 Gene3D - 86 213 IPR027417 -
Trme54762g00001 215 FunFam ATP-dependent bile acid permease, putative 88 213 - -
Trme54762g00001 215 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 212 - -
Trme54762g00001 215 Gene3D ABC transporter type 1, transmembrane domain 1 83 IPR036640 GO:0005524|GO:0016020
Trme54762g00001 215 Pfam ABC transporter 119 211 IPR003439 GO:0005524
Trme54762g00001 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 212 IPR027417 -
Trme54762g00001 215 SUPERFAMILY ABC transporter transmembrane region 4 82 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54762g00001 Trme-Chr54762 74 920 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54762g00001 98 197 Calmodulin-binding Proteins AT2G36910 33.333 3.55e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54762g00001 K05666 - gmx:100811468 370.548