Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54757g00001 ATGTGGCTTGGAACATTTGAAACAGCCGAGGAAGCTGCGAAAGCTTATGATGAAGCTGCGACACTTCTTCGTGGTTCCAACACTCGCACCAACTTCGTCACACATGTTTCCTATGATTCGCCTCTCGCTTCTCGGATTCAAAGTCTTCTTAACAAACGAGGAAAAG 166 0.4639 MWLGTFETAEEAAKAYDEAATLLRGSNTRTNFVTHVSYDSPLASRIQSLLNKRGK 55
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54757g00001 55 Gene3D AP2/ERF domain 1 35 IPR036955 GO:0003700|GO:0006355
Trme54757g00001 55 Pfam AP2 domain 2 25 IPR001471 GO:0003700|GO:0006355
Trme54757g00001 55 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 53 - -
Trme54757g00001 55 SUPERFAMILY DNA-binding domain 1 33 IPR016177 GO:0003677
Trme54757g00001 55 CDD AP2 1 32 IPR001471 GO:0003700|GO:0006355
Trme54757g00001 55 ProSiteProfiles AP2/ERF domain profile. 1 33 IPR001471 GO:0003700|GO:0006355
Trme54757g00001 55 SMART rav1_2 1 40 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54757g00001 Trme-Chr54757 17 182 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54757g00001 1 51 AP2-EREBP Transcription Factor Family AT5G19790 70.588 8.81e-20 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme54757g00001 AP2 6e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54757g00001 K09286 - qsa:O6P43_009860 85.5001