Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54719g00001 CTCCTGAAAACAAACGTGATGATACATAGCATTGAAGTGGGGAAAATGTGGATCAATGAACGATTTCAGGGGAAAAAGGTACTCGTCGTCCTTGATGATGTGAACGAAATTGAACAGTTACAAGCACTATGTGTAAATCCTAAATTGTTTGGTCCAGGAAGTGTATTTGTTGTTACGACGAGAGATATGCACATACTTCGTTATTTTAGGGCCGATTATGTGTGTAAAATGAAGGAAATGGACGAAAATGAGTCCCTTGAGCTTTTCAGTTGGTATGCTTTTAGACAACCTAGTCCAATAAAAGACTTCAATGAACTCTCAAGGAACGTAATTGCTTATTGTGGAGGATTACCACTGGTTCTTGAAGTCCTTGGTTCTTACTTATTTGCTAGGAAAAAACAAGAATGGTTAAGTGTACTATCAAAGTTAGAGAGAATTCCCAATGATCAAGTGCAGAAGAAGCTTAAAATAAGCTATGATGGTTTAATGGGTGATATGGTAAAGGATACATTTCTCGACATATGTTGTTTCTTTATTGGTAAGAACAGAGACTATGTCACAGACATACTAAATGGCTGTGGACTTTATGCTGATGTTGGAATAACTGTCCTCATAGAGCGGAGCCTTGTAAAAATTGAGAAGAATAACAAGCTTGGAATGCATGATTTAATAAGAGACATGGGAAGAGAAATTGTCCGCGTAAGTTCACCACGTGAACCTGGGGAACGTAGTCGATTGTGGTTTCCTGCAGATGTACATGATGTTTTGAC 770 0.3818 LLKTNVMIHSIEVGKMWINERFQGKKVLVVLDDVNEIEQLQALCVNPKLFGPGSVFVVTTRDMHILRYFRADYVCKMKEMDENESLELFSWYAFRQPSPIKDFNELSRNVIAYCGGLPLVLEVLGSYLFARKKQEWLSVLSKLERIPNDQVQKKLKISYDGLMGDMVKDTFLDICCFFIGKNRDYVTDILNGCGLYADVGITVLIERSLVKIEKNNKLGMHDLIRDMGREIVRVSSPREPGERSRLWFPADVHDVLT 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54719g00001 257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 174 IPR027417 -
Trme54719g00001 257 Gene3D - 3 74 IPR027417 -
Trme54719g00001 257 SUPERFAMILY "Winged helix" DNA-binding domain 150 256 IPR036390 -
Trme54719g00001 257 Gene3D - 79 163 IPR042197 -
Trme54719g00001 257 PRINTS Disease resistance protein signature 114 128 - -
Trme54719g00001 257 PRINTS Disease resistance protein signature 21 35 - -
Trme54719g00001 257 Pfam NB-ARC domain 18 161 IPR002182 GO:0043531
Trme54719g00001 257 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 255 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54719g00001 Trme-Chr54719 151 920 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54719g00001 1 256 WRKY Transcription Factor Family AT5G45050 36.187 7.50e-44 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54719g00001 - - tpra:123923837 401.364