Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54689g00001 TTTGGATATTCTCTAAAGTCAACAGAGAAAAGTGATGTTTACAGCATGGGAATTGTGCTTATGGAACTTGTTAGTGGTAAGTTACCAACTGATGCATTATTTAGAGGAGGTATAGACATTGTAAGATGGGTGGAGATGCATATTGACATGAAAGGANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNTGAAGAGTTTGCTGCATTTCAAGTTCTTGAGATAGCTTTACAATGCACAAAAACTTCACCACAAGAGAGGCCATCATCAAGACAAGTTTGTGATCTTCTTCTACATGTGTCCAAGAACAAAAAAGTGGAGTTTAAGAAAATGAATTTGGATTCCTACAACTGA 372 0.3118 FGYSLKSTEKSDVYSMGIVLMELVSGKLPTDALFRGGIDIVRWVEMHIDMKGXXXXXXXXXXXXXXXXXXEEFAAFQVLEIALQCTKTSPQERPSSRQVCDLLLHVSKNKKVEFKKMNLDSYN 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54689g00001 123 SUPERFAMILY Protein kinase-like (PK-like) 6 111 IPR011009 -
Trme54689g00001 123 ProSiteProfiles Protein kinase domain profile. 1 108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme54689g00001 123 Gene3D Transferase(Phosphotransferase) domain 1 2 122 - -
Trme54689g00001 123 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 105 - -
Trme54689g00001 123 Pfam Protein tyrosine and serine/threonine kinase 6 101 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54689g00001 Trme-Chr54689 88 459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54689g00001 1 111 Receptor kinase-like Gene Family AT1G08590 36.937 3.79e-18 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme54689g00001 PK_Tyr_Ser-Thr 2.5e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54689g00001 - - gmx:100797153 161.384