Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54670g00001 ATGCAAGCTCGTGAAAATGCAGCAGCCACCTTTTTCAGCCTCTCTAAAGCGGATGAGAACAAAGTGGCAATTGGTGCATCTGGAGCAATCAAGGCACTAGTTGCTCTCTTCTGCGAAGGAAGTCCAAGAGGAAAGCTCGATGCTGCAACAGCACTATTCAAACTGTGTTTAATCCATGGGAACAAAGGGCGNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNAGGATGGGGCATTGGCAATCATGGCTTTAATAGTTAGCCACCCGGATGCAATAGAAGCATTTAGATCGACGAATGCTATTCCCATTTTGGTGGAATTCATCAGTAATGGATCTTTGAAGAACAAAGAAAATGCAACTTCGGTGCTTATGTACCTATGTAGAGGAGATCCATATTACCTGTCGATTGTCGCATCACTTGGAATGATCAATCCTCTTTCGGAACTGGCAGAAAATGGTTCAGAAAGGGGAAAGCGGAAAGCTGCACAGCTTCTCGAGTTGTTAGGAATTGGGAGACCATTGTGA 558 0.3961 MQARENAAATFFSLSKADENKVAIGASGAIKALVALFCEGSPRGKLDAATALFKLCLIHGNKGRXXXXXXXXXXXXXXXXXXXXXXDGALAIMALIVSHPDAIEAFRSTNAIPILVEFISNGSLKNKENATSVLMYLCRGDPYYLSIVASLGMINPLSELAENGSERGKRKAAQLLELLGIGRPL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54670g00001 185 Gene3D - 84 184 IPR011989 -
Trme54670g00001 185 Gene3D - 1 67 IPR011989 -
Trme54670g00001 185 SMART arm_5 17 57 IPR000225 GO:0005515
Trme54670g00001 185 SMART arm_5 141 181 IPR000225 GO:0005515
Trme54670g00001 185 SMART arm_5 99 139 IPR000225 GO:0005515
Trme54670g00001 185 SUPERFAMILY ARM repeat 2 179 IPR016024 -
Trme54670g00001 185 PANTHER U BOX DOMAIN-CONTAINING 2 179 - -
Trme54670g00001 185 Pfam Armadillo/beta-catenin-like repeat 18 56 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54670g00001 Trme-Chr54670 3 560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54670g00001 1 177 U-box Gene Family AT3G46510 53.672 3.98e-54 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54670g00001 - - tpra:123888033 295.434