Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme546415g00001 ATGTGTGACTACAAGCCTTCGATGATCGCTGCTTCTGCAATGTATTGCGCGAGAGTTGTTGTTGGAATGTACCCGTTTTGGAACAATGATCTGAAGATTTCTGCAGGATATTCAGAACAGATACTATGGCCTTGCGTTAAGGCTATGATGGAACTGTGTAATGAAATTTGTAGAGACGGAACCATGGAAGTTTTCAAGAAGTTTTCTAGTCTATATCAATCTAGGGTTTCGTGTATTGCTCAAGAAATT 249 0.3976 MCDYKPSMIAASAMYCARVVVGMYPFWNNDLKISAGYSEQILWPCVKAMMELCNEICRDGTMEVFKKFSSLYQSRVSCIAQEI 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme546415g00001 83 Pfam Cyclin, C-terminal domain 2 79 IPR004367 -
Trme546415g00001 83 Gene3D - 1 83 - -
Trme546415g00001 83 SUPERFAMILY Cyclin-like 2 80 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme546415g00001 Trme-Chr546415 1 249 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme546415g00001 5 79 Core Cell Cycle Gene Families AT2G26760 37.333 2.02e-11 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme546415g00001 K21777 - rvl:131312523 61.2326